Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02985 AGAGAGACCAAAAGGGAAGCTGCAAAAATGGGTACTGTCTCTCTTCTTAAGTGCTACAGACCCTTATTCTCTACGCTTTTTCCTCGCTCCCCTCCATCAACACTCCACGCCGCCATCTTCAGGAGGAAGAACCTGCGGTCCTTCTGCGCCTGCTCGTCTCCACCGTTGACGGCTGAGAAGGATTGCGGCAAATCCGGCGCCGAGGGTTTCACCCTGAAAAATTCCGCGCCGGAGGTATGGCTGCACAACACCATGAGTAAAACAAAACAACTCTTCAAACCCAAAGTGGAATTCAAAGTGGGAATGTACGTGTGTGGCGTCACCGCCTACGATCTCAGCCATATTGGACATGCACGCGTGTATATCAATTTCGACCTTCTTTACAGATACTTTAAGCATCTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTTGATGACAAGATAATTGCTAGAGCGAAAGAGTTAGGAGAAGATCCAATCAGTTTGAGCCGGCACTATTGTGAAGAATTCTGTCGAGACATGATAACTCTTAATTGTCTGCCTCCCACTGTGGAACCAAAGGTCTCGGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACATTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCCAGTCGAGATCTAGAAGATAACCGAGCTGGTGAGAGGGTTGCAGTTGACTTAAGAAAGAAAAACCCTGCTGATTTTGCTCTGTGGAAGTCTTCAAAGCCTGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATTGATCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGCAAGAAAAGTGATATAAGCGTATGGATGCACAATGGTTTTGTTACAATTGATTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACGATACGTCAGGTTATAGACATTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCTCATTATCGATCTCCTGTTAACTACTCAAATATACAACTTGAAAGTGCTTCAGACCGTATCTTTTATATATATGAGACATTACACGAATGCAAAAGCTTCTTGAAGCAGCATGATCAGACAACTAGAAAAGATTCCATCCCACCAGATACATTGAATATTATTGATAAGTTCCATGATGTTTTTCTGACCTCAATGTCGGATGATCTTCACACGCCAGTTGTATTGGCTGGAATGTCTGATCCCTTAAAATCAATAAATGATTTGCTTCATACCCGTAAGGGGAAAAAACAACAATTTCGAATAGAGTCACTTACAGCTTTAGAGAAGAGCATCGGGGATGTCCTTACTGTTTTAGGACTAATGCCTGCAAGTTACTATGAGTGTTTAAATGGAGATTTTTATGGACATTCTTTTGTGGTAACCCCTGCATTATTGGCCATCGGATTCAATATTGAGATTAATCCGACAATCAATAATACTTCCACCCAGTCTGAAACTGCTATAACAATGGACTGCTACAAATTCTCCGTTTTGCAGCAGCTAAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGAGAAAGTGTTGGAGAAAATAGAAGAACGGGCTGCTGCTAGAATAGAGAAGGACTATGCTAAATCAGATGCAATTAGGAAGGATTTGGCTATTCTTGGTATTACTCTTATGGACAGTCCAGATGGCACAACTTGGAGGCCTACCATTCCTCTTCCACTTCAAGAGCTTCTCTAG 1869 0.4205 RETKREAAKMGTVSLLKCYRPLFSTLFPRSPPSTLHAAIFRRKNLRSFCACSSPPLTAEKDCGKSGAEGFTLKNSAPEVWLHNTMSKTKQLFKPKVEFKVGMYVCGVTAYDLSHIGHARVYINFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKELGEDPISLSRHYCEEFCRDMITLNCLPPTVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDLRKKNPADFALWKSSKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYHPLALRYFLMSAHYRSPVNYSNIQLESASDRIFYIYETLHECKSFLKQHDQTTRKDSIPPDTLNIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLTALEKSIGDVLTVLGLMPASYYECLNGDFYGHSFVVTPALLAIGFNIEINPTINNTSTQSETAITMDCYKFSVLQQLKEKALKRANLTEEKVLEKIEERAAARIEKDYAKSDAIRKDLAILGITLMDSPDGTTWRPTIPLPLQELL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02985 622 Hamap Cysteine--tRNA ligase [cysS]. 79 613 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vimu10g02985 622 PRINTS Cysteinyl-tRNA synthetase signature 102 113 IPR024909 -
Vimu10g02985 622 PRINTS Cysteinyl-tRNA synthetase signature 138 147 IPR024909 -
Vimu10g02985 622 PRINTS Cysteinyl-tRNA synthetase signature 298 319 IPR024909 -
Vimu10g02985 622 PRINTS Cysteinyl-tRNA synthetase signature 267 285 IPR024909 -
Vimu10g02985 622 Gene3D - 382 612 - -
Vimu10g02985 622 NCBIfam cysteine--tRNA ligase 81 487 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vimu10g02985 622 PANTHER CYSTEINYL-TRNA SYNTHETASE 76 616 IPR024909 -
Vimu10g02985 622 CDD CysRS_core 80 381 IPR032678 -
Vimu10g02985 622 Gene3D HUPs 65 381 IPR014729 -
Vimu10g02985 622 Pfam tRNA synthetases class I (C) catalytic domain 93 388 IPR032678 -
Vimu10g02985 622 FunFam Cysteine--tRNA ligase 78 379 - -
Vimu10g02985 622 SUPERFAMILY Nucleotidylyl transferase 79 385 - -
Vimu10g02985 622 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 415 612 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02985 Vimu-Chr10 40775414 40779792 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02985 K01883 - gmx:100786700 1016.91