Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02980 ATGGGATTCTTCGTCGGAATGATCGTCGGTATCGCCATTGGTATCGGGTTGATCATCGGTTTCGCTCGTCACGAGAGCGTTCGATCCAAACGTCGCTCCGATTTGGCGAAGACGATAGCAGCGTTTGCGAGAATGACAGTGGAAGATTCCAGAAAACTTTTGCCTCCTAAGTTCTATCCATCATGGGTGTTAAAGTGGCTTAATGTCCAACTCAGAAGGATTTGGCCACATGTTGATGAGGCAGTGTCTGAGTTGATAAGAACCAATGTGGAACCAATTCTTGAACAGTATAGACCGGTTGTTTTGGCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACTATTGTTGAAGAGGATAGTGGGCCTGATGGTGTGACTATGGATCTTGAGATGCAATGGGATGGTAACCCGAATATCGTTCTTGACATCAAAACCCGAGTTGGTGTCGTACTTCCTGTGCAGGTAAAAGATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCACTAGTGAATGAGTTCCCGGGTTTCGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTGAAGGTTATTGGTGGTGATTTATCAGCCTTACCGGGAGTATCTGATGCAATAGAGGAAACAATTAAAGATGCGATTGAAGACTCTATAACTTGGCCTGTGCGCCAAATTATACCCATTTTACCTGGAGATTACAGTAATCTAGAGTTGAAACCGGTTGGAATACTGGAAGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATTTGATTGGGAAATCCGATCCTTACGCTGTCCTTTTTGTACGCCCGCTTCGTGCCAGAACCAAAACCAGTAAAGTAGTGAACAACCAGTTGAATCCAATATGGAACGAACACTTTGAATTCACTATAGAAGATGCGGCAACGCAGCACTTGACCGTAAGAATTTTCGATGATGAAGGCCTTCAGGCTTCTGAACTTATTGGCTGTGCTCAAGTTTCACTGCAGGAGCTCGAACCTGGTAAAGTCAAGGATGTATGGCTTAAGCTGGTTAAGGATTTGGAGATCCATAGAGATAACAAAAACAGGGGTGAGGTGCACTTGGAGCTCTTGTACTGCCCAATTGGAATGGAAAGCACCATCAAGAACCCTTTTGACCCTGATATCTCATTAACCTCGTTCGAGAAGACCCTCAAGAGTGGTGAGACAGAGGTTGAGGATCCTACAGGGTCACGTAGGAGAAGCAACGTGATCGTAAGAGGGGTTCTATCTGTCACGGTGATTTCAGCTGAAGACTTACCAGTAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTAGTTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCAGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGACGGCTTACACGAAATGTTAATTCTGGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTAACACTGACTAAGGTCATCTTAGAAGGAGAATACAATGAAACTTATCCTCTAGATGGAGCTAAATCCGGAAGCATTTCTTTATATTTGAAGTGGACTCCGCAGCACAAATTCCGGGATACTTAG 1674 0.4307 MGFFVGMIVGIAIGIGLIIGFARHESVRSKRRSDLAKTIAAFARMTVEDSRKLLPPKFYPSWVLKWLNVQLRRIWPHVDEAVSELIRTNVEPILEQYRPVVLASLTFSKLTLGTVAPQFTGVTIVEEDSGPDGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKDIGFTGVFRLIFKPLVNEFPGFGAVCFSLKEKKDLDFTLKVIGGDLSALPGVSDAIEETIKDAIEDSITWPVRQIIPILPGDYSNLELKPVGILEVKLVQAKNLTNKDLIGKSDPYAVLFVRPLRARTKTSKVVNNQLNPIWNEHFEFTIEDAATQHLTVRIFDDEGLQASELIGCAQVSLQELEPGKVKDVWLKLVKDLEIHRDNKNRGEVHLELLYCPIGMESTIKNPFDPDISLTSFEKTLKSGETEVEDPTGSRRRSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLSLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGSISLYLKWTPQHKFRDT 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02980 557 FunFam Extended synaptotagmin-2 413 552 - -
Vimu10g02980 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 387 IPR035892 -
Vimu10g02980 557 Pfam C2 domain 257 361 IPR000008 -
Vimu10g02980 557 Pfam C2 domain 432 534 IPR000008 -
Vimu10g02980 557 CDD SMP_SYT 60 243 - -
Vimu10g02980 557 PRINTS C2 domain signature 497 505 IPR000008 -
Vimu10g02980 557 PRINTS C2 domain signature 475 488 IPR000008 -
Vimu10g02980 557 PRINTS C2 domain signature 449 461 IPR000008 -
Vimu10g02980 557 SMART C2_3c 258 358 IPR000008 -
Vimu10g02980 557 SMART C2_3c 433 531 IPR000008 -
Vimu10g02980 557 ProSiteProfiles C2 domain profile. 236 359 IPR000008 -
Vimu10g02980 557 CDD C2 434 534 - -
Vimu10g02980 557 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Vimu10g02980 557 Gene3D C2 domain 249 386 IPR035892 -
Vimu10g02980 557 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 548 IPR045050 GO:0008289
Vimu10g02980 557 FunFam Plant synaptotagmin 252 394 - -
Vimu10g02980 557 Gene3D C2 domain 429 556 IPR035892 -
Vimu10g02980 557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 428 551 IPR035892 -
Vimu10g02980 557 CDD C2 259 361 - -
Vimu10g02980 557 ProSiteProfiles C2 domain profile. 415 532 IPR000008 -
Vimu10g02980 557 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02980 Vimu-Chr10 40745221 40753172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02980 249 549 Lipid Metabolism Gene Families AT1G51570 22.424 5.63e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02980 - - gmx:100787972 962.985