Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02979 ATGAAGCCAGCTTCGGCCGAGGCAGTTCCTTCGCTATCTTCCACGCCATCGTTCACGGAGGCGGCAACATCGTCGTCATCCTCCGCCGCTGCGGCGGAGGACCTGGCAGTGGGGTCGCGGGATGGTGGCGGCGGGGCTCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAATACTCCGCCGTTTGTCGTTGGACGGTGCACAATTTCCCGAAAATAAAGGCTAGGGCACTGTGGAGCAAATACTTCGAGGTAGGCGGTTACGATTGTCGTTTGCTAATATATCCCAAGGGTGACTCACAGGCGCTTCCAGGGTACATCTCCATCTACCTCCAAATCATGGACCCTCGCGGTACCTCCTCTTCAAAATGGGACTGTTTTGCGAGTTATCGGTTGGCAATCGTGAACGTGGCCGACGATTCCAAAACCATTCACCGAGATTCCTGGCACCGATTCTCCAGTAAGAAGAAATCCCACGGTTGGTGCGATTTCACGCCCTCTTCCACTGTTTTCGACCCCAAATTGGGATACCTCTTCAATACGGATTCCGTTTTGATCACTGCGGATATTCTCATTCTCAACGAGTCCGTTAATTTCACGCGGGACAACAATGAGTTGCAGTCCTCATCTTCCTCCTCATCTTCGACAAGTTCATCCGTTGTTGCAGGTCCCGTGTCTGATGTGTTGAGTGGTAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTTAAGGAGATGATCAAGACACAAAAGATAATGAGCCCGGTGTTCCCTGCGGGGGAATGTAATTTGAGAATAAGTGTGTACCAGAGCTCTGTAAATGGGGTTGAGTATTTGTCTATGTGTCTGGAGAGCAAGGACACGGATAAGACTGTGGTGTTATCTGATAGGAGTTGTTGGTGTTTGTTTAGGATGTCTGTGTTAAACCAGAGGCCTGGTTCCAATCACATGCATAGGGATTCTTATGGCCGATTTGCGGCTGATAATAAGAGCGGTGACAATACCAGCTTGGGATGGAATGATTATATGAAAATGTCGGATTTTATCGGTGTGGATTCGGGGTTTTTGGTGGATGACACCGCTGTTTTTAGCACCTCATTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGTTCTGTGATTGCCGGGAGAAGTGGGAGTGGTGCTAGGAAGTCTGATGGGCATATTGGAAAGTTCACTTGGAGAATTGAGAATTTTACTAGATTGAAGGATTTGCTAAAGAAGAGGAAAATCACGGGTCTGTGCATCAAGAGCCGGAGGTTTCAGATTGGTAATAGGGATTGTCGACTTATTGTTTACCCTCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAACACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTATCAGTTGTGAACCAAAAGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCAAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTTGTGACACTCACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCCGCTGAGGTTCTTATATTGAAGGAGACATCAATAATGCAGGATTTTACTGAGCATGATTCTGAGTTGAGCAGCAGTGGCTCTCCTCTGGATAATTCTGGCAAAAGAAGTTCATTTACATGGAAAGTTGAGAATTTCTTGTCTTTCAAGGAAATAATGGAGACACGAAAAATCTTCAGTAAATTCTTTCAAGCTGGTGGATGTGAACTTCGAATTGGTGTATATGAGTCGTTCGACACGATATGTATTTATTTAGAGAGCGACCAGGCTGTTGGTAGTGATCCCGATAAAAATTTCTGGGTGAGATACAGGATGGCTGTTGTGAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACAAAGACGTGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGTGGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGTCCTTGGTTTGAGTTTTCCGATTTAGAGGTTTTAGCATCAGAGGATGATCAAGATGCATTGACAACTGACCCTGATGAGCTCATTGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCTAGAGCTGGATTCCATTTAACATATGGAGATAATCCTTCTCAGCCACAAGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCAATTGCAGGGTTTCTTACTGGTCTTCGGGTCTATCTTGATGATCCTGCAAAAGTGAAGCGCCTGCTTCTACCTACCAAGCTGTCTGGTAGTTGTGATGGGAAGAAGGCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCTATCATAGATTTACTATTAGATATAATGGTCGAGTGCTGTCAACCTTCTGAAGTAGGTCCTGTTGCTGATTCTGTTGATGCATGTTCTAAACCTTCTTCAGATGGAAGTGGAGCTGCTACTCCTCTCGAGTGTGAAAGAGAAAGTGGAACAATGGAGTCTGCACGAGTTCCTGGTAATGAGAGGCTGGATTCTGTTGTTGAAGAAAGCAGTAATACATCTGCTGTGCAGAGTTCTGATTTAAAAGGGAATGGTATTCAGGAAAAAGCTGTTCCTGGACATCCTATTTGTCCACCAGAGACATCTGCCACCGCATCAGAAAGTGCATCATTTCGGTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTTTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCTGTTCCTCAAGGCTGTCCAGAACCAAGACGTCGGCCTCAATCTGCACAAAAAATTACTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCTGACCTTGTTGCTTTGGTACCTAAATTGGTTGAGCAGTCTGAACACCCACTTGCTGCCTATGCACTTCTTGAGCGTCTTCAAAAGACAGATGCAGAACCTACTTTACGAATACCAGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCTTTTGAGCTTTTGAATGACTCAAATGATGAACCCCTTGCTACAGCGATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCACCTTGCGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTCAGGGACATTGATTGTGACGATGACTATGGTGACAATTGCTCAGCTCTTCCATGCGGGATTTTCTTATTCGGTGAACATGGCACTTCTCCCAGTGGGCTGCATGTGATTGATGAGCAGGCTTATCAAGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCCCAAACATTTGAGAGAGCTGTAGCTCGTGGTGCAATAAGTGCTCAGTCTGTAGCCCTGGTATTGCAAAGCCGTCTTTCCCAAAGATTGAATAATAATGGAAGATATGTTTCTGAAAATTTCCAACATACGGATGGTTCTACAGAGGGAGATGCCTGTGAGCAATTGGGAGTTCAGAGGGATGATTATGCTTCTGTTCTTGGCCTTGCCGAAAATTTGGCCCTCTCTATAGATCCATGCGTGAAAGAGTTTGTTAAACTGCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTTATAGGGGGAGGACGCTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACTGACAGTGGTCGCGAAGTAGATTTTGATTTGGATATATTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTGGACAGGGCTGCACTATGGCACCAGTTGTGTGCTAGCGAGGATGAAATTCTTCGCATTCGTGAAGAAAGCAAAACTGATATTTCTAATATGGCTAAGGAAAAAGCTATTATATCACAAAAGCTAAGTGAATCTGAAGTGACAAACAACCGATTGAAGTCTGAAATGAGGGCTGAGATGGATCGATTTTCTCGTGAAAAGAAGGAACTAGCTGAACAAGCTCAAGAAGTTGAGAGTCAGCTTGAATGGCTTCGCTCAGAACGTGATGATGAAATTGCGAAGTTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCCCTTGCTGAGAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCGACAGAGAATGTGACTCGGGAGGAAATTCGGCAATCACTTGAAGACGAAGTCCGTAGATTGACTCAAACGGTTGGGCAAACTGAAGGGGAAAAGCGTGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGACATGCCCCTCTATACGGCGCTGGTCTGGAGGCTTTGTCATTGAAAGAGTTGGAAACACTATCACGCATTCATGAAGATGGGCTTAGACAGATCCATGCCATTCAACAGCGCAAAGGGAGTCCTGCAGGGAGCCCTCTTGTGAGCCCCCATGCTCTCCCTCATACCCATGGATTGTATCCAGCTGCCTCGCTTCCTATGGCTGTGGGACTACCTCCCTCAATCATCCCAAATGGTGTGGGGATCCACAGCAACGGCCATGTGAATGGTGCAGTTGGACCCTGGTTTAACCACTCTTGA 5031 0.4482 MKPASAEAVPSLSSTPSFTEAATSSSSSAAAAEDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPKIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQSSSSSSSSTSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQRPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGVDSGFLVDDTAVFSTSFHVIKEFSSFSKNGSVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELSSSGSPLDNSGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEVDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSSDGSGAATPLECERESGTMESARVPGNERLDSVVEESSNTSAVQSSDLKGNGIQEKAVPGHPICPPETSATASESASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKITLVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKTDAEPTLRIPVFGALSQLECGSEVWERILFQSFELLNDSNDEPLATAIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDNCSALPCGIFLFGEHGTSPSGLHVIDEQAYQASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVALVLQSRLSQRLNNNGRYVSENFQHTDGSTEGDACEQLGVQRDDYASVLGLAENLALSIDPCVKEFVKLLYMIMFRWFANESYRGRTLKRLVDRATSNTDSGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEILRIREESKTDISNMAKEKAIISQKLSESEVTNNRLKSEMRAEMDRFSREKKELAEQAQEVESQLEWLRSERDDEIAKFSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHAIQQRKGSPAGSPLVSPHALPHTHGLYPAASLPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02979 1676 CDD MATH 398 533 IPR002083 GO:0005515
Vimu10g02979 1676 MobiDBLite consensus disorder prediction 859 945 - -
Vimu10g02979 1676 Coils Coil 1516 1543 - -
Vimu10g02979 1676 MobiDBLite consensus disorder prediction 930 944 - -
Vimu10g02979 1676 MobiDBLite consensus disorder prediction 894 913 - -
Vimu10g02979 1676 ProSiteProfiles MATH/TRAF domain profile. 229 366 IPR002083 GO:0005515
Vimu10g02979 1676 SUPERFAMILY TRAF domain-like 566 690 - -
Vimu10g02979 1676 Gene3D - 1433 1626 - -
Vimu10g02979 1676 PANTHER TRAF-LIKE FAMILY PROTEIN 25 1676 - -
Vimu10g02979 1676 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g02979 1676 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Vimu10g02979 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 372 IPR008974 GO:0005515
Vimu10g02979 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 555 691 IPR008974 GO:0005515
Vimu10g02979 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Vimu10g02979 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 389 542 IPR008974 GO:0005515
Vimu10g02979 1676 ProSiteProfiles MATH/TRAF domain profile. 397 533 IPR002083 GO:0005515
Vimu10g02979 1676 CDD MATH 230 362 IPR002083 GO:0005515
Vimu10g02979 1676 Coils Coil 1399 1508 - -
Vimu10g02979 1676 Pfam MATH domain 429 535 IPR002083 GO:0005515
Vimu10g02979 1676 Pfam MATH domain 67 191 IPR002083 GO:0005515
Vimu10g02979 1676 Pfam MATH domain 578 685 IPR002083 GO:0005515
Vimu10g02979 1676 CDD MATH 63 189 IPR002083 GO:0005515
Vimu10g02979 1676 ProSiteProfiles MATH/TRAF domain profile. 565 689 IPR002083 GO:0005515
Vimu10g02979 1676 SUPERFAMILY TRAF domain-like 398 539 - -
Vimu10g02979 1676 SMART math_3 402 514 IPR002083 GO:0005515
Vimu10g02979 1676 SMART math_3 61 169 IPR002083 GO:0005515
Vimu10g02979 1676 SMART math_3 234 347 IPR002083 GO:0005515
Vimu10g02979 1676 SMART math_3 570 670 IPR002083 GO:0005515
Vimu10g02979 1676 SUPERFAMILY TRAF domain-like 227 372 - -
Vimu10g02979 1676 CDD MATH 567 689 IPR002083 GO:0005515
Vimu10g02979 1676 MobiDBLite consensus disorder prediction 8 29 - -
Vimu10g02979 1676 SUPERFAMILY TRAF domain-like 58 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02979 Vimu-Chr10 40730477 40739312 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02979 - - ccaj:109798115 3109.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02979 10 40730477 40739312 Vimu10g02979 10 40730477 40739312 ECH