Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02975 ATGCAGAGACGAAGTCCTCCCAAGCACAGACACGATGGAACTTCGCCGCTGCCTCTCGGCATGGATTGGAGTCCTGCGCCTCGAAAATGGGTCAGTTACAAGAGGTTGGGATGGAAGGAGAATGGGACTGAACTATTTGCAGTGGAGGAAGCTAAAGGGAGGAAGATTGAAGGTGTATGCAAGCATTTTGAAATGCATGATGAAGAACTATTGGCATCAATATTTGGAGAGCCAGAAATTTGTCAATGGAATCACAAGAGTTTAAATCCTATTGTACAGAATGGGCAAGATACAGTATGGCCACACAATCATCGTACTGGATGGAGTTATTGTGTCACAATACCTTCTTGGTCCTTTGTTCCAAAATCAAGGAATTCAGATCCTGTAGTGGGACAGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAGGCTCCATGGAGTATTAAGAAGGTTCAATGATTTTTTAAAGTTGTTTGCTGATCTTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCTCCGCCCAAGGGACTCTTGCGTTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGATGCTCTTTGGAAGAGTGGATCACGAAACTATTGTCTGACATTGATGTATCAAGATGCGCTGCAGTTGCATCATTTCTCGAACTAGAAGCAGCTGCTAGATTTTCATTCCAAGATGCAAGCCAGCAAAATTCTGAAACAGATCCTGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCAAGCTTATCGTTACTTGCTGGCAGTTCATCAGTTGCCTCTGATTATGGTAGTGATACCGCATATGAGCCATCTGACCTAGGAACACCAAGAGTTGGACGGGATGATAATTCTGATGTTGGTACGGATGATCTAACATTGGATGAAGATATGACAAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGACGAAGGTTTATTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTACCTAGGCATAAAGCAAATGCCAGACATGTGAACTATGTTACACAGAAGGACAAAAACAATGGAAATTTATACGATTCTTCACTTTTAGGTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCCAAGGTTGTTGGTCATGTGCGTAAGCTTTCAAATGAGAGTTTTGGAAGTGAAGGAAGCTCATTACGTGGTAGTGACATCTCTAATTTTGGGATTCCAAATTCCTCTGGTGAGGGCTCTCATGACCTTCCTGGATCTGCTTCGGTTTCAAGAGACACGGATATTATGGGCCACACAAAGTTGAAATCTACTGGTGATACTCAATTAGTCTTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAACGAAGGCTAGGCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAACTGCAAAGGATTTTCTTGCAACTAAGAAAAACAAGGAGAACTTACAACAGGCTATTCTAATTGAGAGAGAAAGGTTTACCCAAATGCAGTGGGATATGGAGGAACTTAGACGAAAATCAATGGAAATGGAGATGAACCTAAAGTCAGAATCGGGGGGGAATTCTTACCAGAATTCGACAAAGGAATCAATTGTTCTGCAGAATGATGTACTGTTACAGAATTTAGAAACTACTAAAGAGCATCTAGAAGTTTTGTCAAAACAGTATGGAGAGCTAGAAGCAAAATCCAAGGCAGATCTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTTCGTAACTCCCAAACAAAGTTAAAGAAAGAGCTTAGTGAGTCGATAAAAGAAAACAGTGAAACTGAGAAACTACTACTTCACGAAAGAGAGAGGAGGGAACGGGCAGAAGCTGCGCGGAGAAAACTGCTGGAGAAATGCAGGTTTCTTTTCAACCAGCTTCAGGAGTGCAATGTCAGTCTTCCTTATGAATGTGAAGATAGAACAGTCATGAATTCATCATCATTGAGTGATGCTTTTAATCAATTAACGACATCCGATGACCAAATGGACATCCTATTATCAGAGGTAGAAAACTTAGATAAGGAATATGGAAGTGCGGTTTCCAGTGTAGATAAAGCGAATGGCACGAAAGATGGTGTAATCTGTGATGATGAAGTGGGTAAGATCATAGCAGACTTGTTCATGGATAATGTTAGACTGAGAAAACAGACAAACCGTGTCGCAAGGCATGCTCTCAAATTGGACATGACAGGAACTGATGATACCCCTTCAATGGAAACTATATCAAGTATTTAG 2319 0.4084 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWVSYKRLGWKENGTELFAVEEAKGRKIEGVCKHFEMHDEELLASIFGEPEICQWNHKSLNPIVQNGQDTVWPHNHRTGWSYCVTIPSWSFVPKSRNSDPVVGQFYRVQVGVQSPEGITRLHGVLRRFNDFLKLFADLKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWITKLLSDIDVSRCAAVASFLELEAAARFSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLLAGSSSVASDYGSDTAYEPSDLGTPRVGRDDNSDVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYVTQKDKNNGNLYDSSLLGNNTMELFSEPGHAKVVGHVRKLSNESFGSEGSSLRGSDISNFGIPNSSGEGSHDLPGSASVSRDTDIMGHTKLKSTGDTQLVFPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEITAKDFLATKKNKENLQQAILIERERFTQMQWDMEELRRKSMEMEMNLKSESGGNSYQNSTKESIVLQNDVLLQNLETTKEHLEVLSKQYGELEAKSKADLKVLVKEVKSLRNSQTKLKKELSESIKENSETEKLLLHERERRERAEAARRKLLEKCRFLFNQLQECNVSLPYECEDRTVMNSSSLSDAFNQLTTSDDQMDILLSEVENLDKEYGSAVSSVDKANGTKDGVICDDEVGKIIADLFMDNVRLRKQTNRVARHALKLDMTGTDDTPSMETISSI 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02975 772 Coils Coil 559 586 - -
Vimu10g02975 772 MobiDBLite consensus disorder prediction 396 430 - -
Vimu10g02975 772 Pfam PX domain 152 223 IPR001683 GO:0035091
Vimu10g02975 772 Coils Coil 591 618 - -
Vimu10g02975 772 Gene3D - 123 250 IPR036871 GO:0035091
Vimu10g02975 772 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g02975 772 SUPERFAMILY PX domain 103 225 IPR036871 GO:0035091
Vimu10g02975 772 ProSiteProfiles PX domain profile. 112 229 IPR001683 GO:0035091
Vimu10g02975 772 SMART PX_2 115 225 IPR001683 GO:0035091
Vimu10g02975 772 FunFam Phox (PX) domain-containing protein 109 247 - -
Vimu10g02975 772 MobiDBLite consensus disorder prediction 275 306 - -
Vimu10g02975 772 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 87 765 IPR044588 GO:0015031
Vimu10g02975 772 MobiDBLite consensus disorder prediction 396 431 - -
Vimu10g02975 772 Coils Coil 626 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02975 Vimu-Chr10 40686202 40696264 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02975 - - gmx:100792151 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02975 10 40686202 40696264 Vimu10g02975 10 40686202 40696264 ECH