Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02955 ATGAACTTAGAAGCAAGTGAAAACGATTCAGTGGTGACTCAGATCAGCATTGGTGGATTTGACAGTGAGGTAAAAGCAAGTGATCTGGTGAATTATTTGGAGAATAAAATTGGACTTGTCTACAGGTGTAGGTTAAAGACTTCTTGGACCCCTCCAGAGTCATATCCGGAATTTAATATCACTGATACTGCAAAGATTACGAGAACAGATGACTATATGAAAGTCAAGCCTCATGCCTTCGTGCATTTTGCATCTTCGGAGTCAGTGACTGCTGCCCTCAATGCTTCAGGTCGTTGTGATATGTTTTTAAAGAATGAACCCTTAAAGGTCAGCTGTGGACCTGAAAATCCATACTTCCTGAACCAAAGGAGGAGAACTACAACTCCTTTTAAGATGTCTGATGTAATTGTTGAAATTGGAACATTGGTTAGCCCAGGGGAGTTTTCTGTTGCTTGGAAAGGACCTGATAAAGGAGTAAAATTCCTAGTGGATCCTTTTGATGGCATGTGCAGGTTTTGTTTCACTAGAGATACTGCATTCTCATTCAAGAGTATAGACAAAAAGGCAGTTATAAAGTGTGATTTTCAGGTGGGATTCCTGGTTAGAGACATTAATGAGATGAGGAGATATAATGATACATCGTATCTCGTTGTATTATTACACCTAGCTTCTTCACCTTGGGTTTGGTACAGAACTGCCGAGGATGACATTGAAGATTTAGTACCATTTGATTTACTGGATGATGATGATCCTTGGATTAGAACCACTGATTTTACTCCTAGTGGGGCAATTGGTCGATGCAATTTTTATAAAATTTCAATCCCTCCTCGGCATGGTGCAAAATTGATGAAGGCCATGCTTTATCTGAAAGGTCAGAGAGTGCAAATACACGAGCTTCCACTTAAACAGACCCTAAGGGCACTGAATGAACCTGATTTTGGCAGGCCCATGTTAGATGCTTTCTTTTATATAGATTATCAGAAGGGCATTGCTTTTGACATAATGTTTTTGGTCAATGCTGTTGTACATAAAGGCATATTCAATCAGCACAGGTTGTCTGATAGGTTTTTCGAATTGCTAAGAAATCAATCTGAGGAGCTCAATGTGGCTGCCCTGAAGCATTTATGTTCTTACAAGCGCCCGGTATTTGATGCAACTAAGAGGCTAAAAGTAGTTCAAGAATGGTTGCTTAGAAACCCAAAACTCTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGGAGATTGGTTATTACTCCATCAAAAGCGTATTGTATACCACCTGAAGTTGAACTTTCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGAGTGACCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCCCTTAACTATTATGTTGCTCCTATTGTGAAGGAAATCACATCAAACACGTTCCCTCAAAAGACAAAAATATATAATAGGGTGAAGACCATCTTGGAAAAGGGATTTTCCTTTTGTGGTCGAAAATATTCATTTTTAGCCTTTTCATCCAATCAACTTAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGGAAAGATAAGATGTGATGAAATACGGAGTTGGATGGGCAGGTTTAATCAGAAGAATGTTGCAAAGTGTGCTGCTAGGATGGGACAATGCTTCTCATCTACCTATGCAACAGTTGAAGTTGTTGCAAATGAGGTGAACTTCGCGCTACCTGATGTTGAGCGGAATAATTACGTTTTCTCTGATGGAATTGGTATGCTCTCTCCTGATCTTGCAAGGGAAGTAGCAGAAAAATTGAAATTGGACAATATACCCTCTGCTTACCAGATCAGATACGCTGGTTTTAAAGGGGTTGTGGCTTCTTGGCCTGCTAAAGGGGATGGGATCAGACTTTCTTTGAGGCCTAGTATGAACAAGTTTCAGTCTTCTCATACTATCTTGGAGATCTGTGCTTGGACTAGGTTTCAGCCTGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCACTGGGTGTGCCTGATGAAATATTTTGGCAAATGCAGGAGGCAATGCTTTTGAAGTTAAACCAAATGCTTGTGGATGCAGATATCGCTTTTGACGTTCTTACCAAATCATGTGCTGAGCATGGGAATGCTGCAGCAATAATGTTAAGTTGCGGCTTCAATCCCCAAACAGAACCTCATCTTAGAGGTATGTTAACTTCTACACGTGCTGCACAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGAGTCTTAGATGAGTCGGGTGTTCTTGAACAGGGGCAGTGCTTTGTTCAAGTGTCTACTCCATCTCTTGAGAATTGTTTCTCAAAGCATGGGTCAAGGTTTTCAGAGACAAAGAACCTGCAAGTAGTTAAAGGTTTTGTGATTATAGCCAAAAATCCTTGTCTTCATCCAGGTGATGTACGAGTTTTGGAGGCAGTTGATGCCTCCGATTTACATCATTTATGCGATTGTCTTGTTTTCCCTCAGAAGGGTGACAGGCCACATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTCATTCCACCAAGTAAGAGGAGCTGGGTACCTATGGAGTATGCCGCTGCAGAAAGCAAACTTCTGACACGTCAAGTCATGACTCGAGACATCATAGAATTTTTTGTCAGAAACATGGTAAATGAAAATTTGGGTGCTATCTGCAACGCACATGTGGTGCATGCTGATTCCAGTGACTATGGTGCATTGGATGAGAAATGCATACACTTAGCGGAACTAGCTGCTACTGCTGTTGATTTTCCAAAGACTGGGAAGATTGTCAGTATGCCTTATCAGCTGAAACCAAAACTGTACCCTGATTTTATGGGGAAAGAGAATCACCAGTCGTACAGGTCGAAGAAAATTCTGGGTAGACTTTACAGGCGTATCAAAGATGCTTATGATGAAGATATTGATGCACCCTATTTGAACTTTGTGTCTGGCGATATACCATATGATAAAGATCTTGAGGTTCCAGGATCTGCTGATTTTATTGCTGATTCGTGGGAGCAAAAATGTGCATATGACGGCCAGTTGAGTGGGTTACTTGGTCAATACAAAGTTAAAAGAGAAGAGGAAGTTGTTACTGGACAGATATGGTCCATGCCAAAATACAACAGCAGGAAGCAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCTCTAAAAAAGGAATTTAGGCACATTTTTGAGAGATTGAGTTCAGATGTTGGAGAATTAAGCGAGGAAGAAAAAAATTCTTTGTATGAGCAGAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCTCATTGGGTCAGAAAGTCCCTTGATCTGAAAGATAAATCCCCAGAAAACCAAGAGGCTGATGGTTTGGGAAGCACGGTGATGTTGAGTTTTCCTTGGATTGCTGTTGATTACCTTGCTCGCACAAAGATAAGGGAACGGCATCGGAAATCTGGAAATTTTGATTCAACTAAGCCAGTTGATTCTCTGGCAAAGTATCTATCAGAAAGGTTATAG 3615 0.4086 MNLEASENDSVVTQISIGGFDSEVKASDLVNYLENKIGLVYRCRLKTSWTPPESYPEFNITDTAKITRTDDYMKVKPHAFVHFASSESVTAALNASGRCDMFLKNEPLKVSCGPENPYFLNQRRRTTTPFKMSDVIVEIGTLVSPGEFSVAWKGPDKGVKFLVDPFDGMCRFCFTRDTAFSFKSIDKKAVIKCDFQVGFLVRDINEMRRYNDTSYLVVLLHLASSPWVWYRTAEDDIEDLVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQIHELPLKQTLRALNEPDFGRPMLDAFFYIDYQKGIAFDIMFLVNAVVHKGIFNQHRLSDRFFELLRNQSEELNVAALKHLCSYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNTFPQKTKIYNRVKTILEKGFSFCGRKYSFLAFSSNQLRDRSAWFFAEGKIRCDEIRSWMGRFNQKNVAKCAARMGQCFSSTYATVEVVANEVNFALPDVERNNYVFSDGIGMLSPDLAREVAEKLKLDNIPSAYQIRYAGFKGVVASWPAKGDGIRLSLRPSMNKFQSSHTILEICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFNPQTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLQVVKGFVIIAKNPCLHPGDVRVLEAVDASDLHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAAAESKLLTRQVMTRDIIEFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKIVSMPYQLKPKLYPDFMGKENHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVSGDIPYDKDLEVPGSADFIADSWEQKCAYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHIFERLSSDVGELSEEEKNSLYEQKASAWYQVTYHPHWVRKSLDLKDKSPENQEADGLGSTVMLSFPWIAVDYLARTKIRERHRKSGNFDSTKPVDSLAKYLSERL 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02955 1204 SUPERFAMILY RNA-binding domain, RBD 9 121 IPR035979 GO:0003676
Vimu10g02955 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 11 1201 IPR007855 GO:0003968
Vimu10g02955 1204 Pfam RNA dependent RNA polymerase 420 999 IPR007855 GO:0003968
Vimu10g02955 1204 CDD RRM_SF 15 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02955 Vimu-Chr10 40529229 40535413 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02955 K11699 - gmx:100795178 2263.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02955 10 40529229 40535413 Vimu10g02955 10 40529229 40535413 ECH