Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02929 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTCCAGAGAAGAGAATCGTGCCAGCGATGCGGGGAGCCAAGGAGTGGCGCCGACTACGGCGGCGCCTTCGGAGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCTGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGTCTCCAAGGAGGACTCCTCCACCGGATCATACGACGTCGACATCACCCGAATGAGACCCTACGGCTTCGGCAGCGGCTCCTCCGCCCGACCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCGAATAGAATGGAGTGCTACAGATGCAATGCACCCAGGGACTCTAATAGTGGCAGACCTCCCTATTCATCGTAG 471 0.5881 MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGADYGGAFGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGVSKEDSSTGSYDVDITRMRPYGFGSGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSNSGRPPYSS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02929 156 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Vimu10g02929 156 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
Vimu10g02929 156 SMART zf_4 118 144 IPR001876 -
Vimu10g02929 156 SMART zf_4 5 29 IPR001876 -
Vimu10g02929 156 SMART zf_4 58 84 IPR001876 -
Vimu10g02929 156 PANTHER ZINC FINGER PROTEIN 53 148 - -
Vimu10g02929 156 SUPERFAMILY Ran binding protein zinc finger-like 52 87 IPR036443 -
Vimu10g02929 156 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Vimu10g02929 156 Gene3D - 51 88 - -
Vimu10g02929 156 Gene3D - 2 32 - -
Vimu10g02929 156 Gene3D - 108 148 - -
Vimu10g02929 156 SUPERFAMILY Ran binding protein zinc finger-like 110 148 IPR036443 -
Vimu10g02929 156 FunFam Ran-binding zinc finger protein 50 87 - -
Vimu10g02929 156 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Vimu10g02929 156 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Vimu10g02929 156 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Vimu10g02929 156 Pfam Zn-finger in Ran binding protein and others 56 86 IPR001876 -
Vimu10g02929 156 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Vimu10g02929 156 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Vimu10g02929 156 FunFam Ran-binding zinc finger protein 106 147 - -
Vimu10g02929 156 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02929 Vimu-Chr10 40339018 40341668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02929 - - gmx:100811107 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02929 10 40339018 40341668 Vimu10g02929 10 40339018 40341668 ECH