Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02924 ATGTTTGATGTTACTGCTCGGTTAACATATAAAAATGTCCCTACCTGGCATCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAAGCAAAACAGGTTACTTTCCACAGGAAGAAGAACTTGCAATACTATGAGATCTCAGCTAAGAGTAACTACAACTTTGAGAAGCCATTTTTGTATCTTGCTCGTAAACTTGCAGGTGATCCTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATTGATTTAGCTGCGCAACAACAGCATGAAGCTGAGCTTGCTGCAGCTGCCAGTCAGCCCCTTCCTGACGATGACGATGACGCATTTGAGCTTTGCCAAATCAGCAAACAGTTGACTACCCGAGTTTCAAGCTCGTCATCGTCGGTGACGGTGGAACAGCGACTATTGGTGTGGAAGTTCACCCGTTGGATTTTTTCACTAACTGTGGAAAGATTCGCTTCTACTGTTGGGATACTGCGGGTCAAGAGAAGTTTGGTGGTCTCAGGGATGGATATTAGTAAGTTCTTTTCTGGTTTTTGCGTGAACTATTGGCAACAAGAACAGCAGACTCTTTGCATTCATGGACAATGTGCGATCATCATGTTTGATGTTACTGCCCGGCTAACTTACAAAAATGTTCCTACTTGGCACCGTGATCTTTGTCGGGTTTGTGAGAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTAAAGAATAGGCAAGTGAAGGCCAAGCAGGTTACTTTTCACAGAAAGAAGAACTTGCAGTACTATGAGATATCTGCAAAGAGCAACTATAATTTTGAAAAGCCATTCTTGTACTTGGCTAGGAAACTTGCAGGAGATCCTAACTTGCACTTTGTAGAATCTCCTGCGTTGGCTCCACCAGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCCGCAGCTGCTAGTCAGCCCCTTCCAGACGACGACGATGATACATTTGAGTAG 1053 0.4368 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFELCQISKQLTTRVSSSSSSVTVEQRLLVWKFTRWIFSLTVERFASTVGILRVKRSLVVSGMDISKFFSGFCVNYWQQEQQTLCIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02924 350 MobiDBLite consensus disorder prediction 328 350 - -
Vimu10g02924 350 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 203 221 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vimu10g02924 350 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 259 277 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vimu10g02924 350 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 223 244 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vimu10g02924 350 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 297 319 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vimu10g02924 350 PANTHER RAN GTPASE 209 348 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vimu10g02924 350 SMART rab_sub_5 193 303 - -
Vimu10g02924 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 103 IPR027417 -
Vimu10g02924 350 Gene3D - 141 348 IPR027417 -
Vimu10g02924 350 Gene3D - 1 128 IPR027417 -
Vimu10g02924 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 323 IPR027417 -
Vimu10g02924 350 Pfam Ras family 207 300 IPR001806 GO:0003924|GO:0005525
Vimu10g02924 350 Pfam Ras family 1 80 IPR001806 GO:0003924|GO:0005525
Vimu10g02924 350 SMART ras_sub_4 180 303 - -
Vimu10g02924 350 FunFam GTP-binding nuclear protein 203 348 - -
Vimu10g02924 350 ProSiteProfiles small GTPase Rab1 family profile. 124 350 - -
Vimu10g02924 350 ProSiteProfiles small GTPase Rab1 family profile. 1 132 - -
Vimu10g02924 350 SMART ran_sub_2 1 129 - -
Vimu10g02924 350 SMART ran_sub_2 143 349 - -
Vimu10g02924 350 FunFam GTP-binding nuclear protein 1 128 - -
Vimu10g02924 350 ProSiteProfiles small GTPase Ran family profile. 1 300 IPR002041 GO:0003924|GO:0005525|GO:0006913
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02924 Vimu-Chr10 40306665 40312799 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02924 K07936 - sko:100374136 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02924 10 40306665 40312799 Vimu10g02924 10 40306665 40312799 ECH