Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02921 ATGACAACAGTGAAAAGAAAGAACGGTCTTTCTGGTTTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGTTGCAACAGTATTTCTGCTGGACTTGGTATGGCAGTTGCCCGGGATATTAAGGGCAGACAAGAACGAGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCATATGAGGCAATGAGCAATGCAGGATACTTAGACTCAAATATGGTTGTGATTTTGAATGATAGTCGTCACTCTTTACTTCCAAAAATTGAGGAAGGCCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCCAAGGGTGTTACTAAACGAATTGGTATGCATGAGTTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATAGGTCCCCAAGGTTCTACTCTTTTTGAGGAGCTTGGGTTGTACTACATAGGTCCAGTGGATGGACACAATATTGAGGATCTAATATGTGTTCTGCAAGAAGTTGCTTCCCTGGATTCAATGGGACCCGTTTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGAAAACAATCAGAAAAGTGATATAACAGATAGGAAACAAGATGGTGGCATTTCTTTTGATCCTTTTAAATACGATTCATTAGATAATGTTGTTCGGCCTCAAACATATGGCGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCTGGAATAGCGATGGAGTCTTCCCTTGAACTGTTTCAGGGGAAATTTCCAGATAGGATTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACCTTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTGCAAAGAGCATATGATCAGGTGATACACGATGTTGATCAACAGAGAATTCCAGTGCGCTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGCCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTAGCTACTGCCACTCATATCAATGACCAACCAGTCTGCTTTCGCTATCCAAGGGGTGCCCTGGTTGGGAAAGGCTACACTGGAGGTGATGGAATCCCCATCAAGATTGGAAGAGGAAGAATTCTTGTTGAGGGTAAAGATGTTGCTTTGCTGGGATACGGATCGATGGTCCAGAACTGCCTAAAGGCTCATTCACTCCTAGCCAAACTTGGCATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAACTTCTGAGGCAGCTTTGTAAACATCACTCTTTTCTAATCACTGTCGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCCGAGTTTATTGCAGTTAATGGACTACTCGATGGAAGAATTAAGTGGCGACCAATAGTCTTACCTGACAGATATATTGAACATGCATCACCAAATGAACAGCTTGACCAAGCGGGGTTGAGTGGACACCACATTGCTGCCACGGCATTGAGTTTGCTAGGCCGTACACGGGAAGCTCTGCAGTTTATGTGTTCCTCCTGA 1686 0.4371 MTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGMHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENNQKSDITDRKQDGGISFDPFKYDSLDNVVRPQTYGDCFVETLVAEAEKDKDIVVVHAGIAMESSLELFQGKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPVCFRYPRGALVGKGYTGGDGIPIKIGRGRILVEGKDVALLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFMCSS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02921 561 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 238 406 - -
Vimu10g02921 561 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 417 549 - -
Vimu10g02921 561 CDD TPP_PYR_DXS_TK_like 245 398 - -
Vimu10g02921 561 Gene3D - 1 206 - -
Vimu10g02921 561 Pfam Transketolase, pyrimidine binding domain 240 401 IPR005475 -
Vimu10g02921 561 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 238 427 IPR029061 -
Vimu10g02921 561 Gene3D - 239 405 - -
Vimu10g02921 561 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 1 546 IPR005477 GO:0008661|GO:0016114
Vimu10g02921 561 Pfam Transketolase, C-terminal domain 417 540 IPR033248 -
Vimu10g02921 561 MobiDBLite consensus disorder prediction 200 219 - -
Vimu10g02921 561 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 555 IPR005477 GO:0008661|GO:0016114
Vimu10g02921 561 SMART Transket_pyr_3 239 404 IPR005475 -
Vimu10g02921 561 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 1 199 IPR005477 GO:0008661|GO:0016114
Vimu10g02921 561 SUPERFAMILY TK C-terminal domain-like 412 548 IPR009014 GO:0003824
Vimu10g02921 561 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 8 301 IPR029061 -
Vimu10g02921 561 MobiDBLite consensus disorder prediction 203 219 - -
Vimu10g02921 561 Gene3D - 417 548 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02921 Vimu-Chr10 40286004 40293432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02921 281 499 Acyl Lipid Metabolism Gene Families AT1G55510 23.529 1.18e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02921 K01662 - gmx:100793268 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02921 10 40286004 40293432 Vimu10g02921 10 40286004 40293432 ECH