Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02912 ATGACGATTTCATGTTTTGATTTTTGGAAGGGTGGAATGATAGTAGATGAAGGAAGTGAGGAGTGGAAAAAGATGAGCATGAAAGTGAAAGAAGCATGTGAGAGTGATGGTTGTTTCCTCTTGAGGTGTGATGAGATCAACTCCAAAGGGGCACACAAAGAACTGTTTAAAAATATGAAAGCATTGTTTCATTTGCCTCAAGAAACAAAGCAACAATACATCAGTCCAAAGCCTTTCAGGAGCTTCAGCTTGTATAACTATATGGACACTCACTATGAAAGCTTTGGACTCGATGATGTTCTTCTCTCAACATCAGTGGACACCTTAGCCAACCTCATGTGGCCTCAAGGAAACTCACATTTTTGTGAGACATTGAAGGGTATGAGCTTAAAGATGTCAGAAGTAAGCTTGGTGATCCTGAAAATGATTGTGGAGGGTTATGGCCTTTCCCAACATCACATTACATATGTTGAAAACATGAAGAGTTCTAGCGACATACGATTAAACATGTACATTACTGACAAAAGCAATGAAAAGAAGTATAAGTCCAATGGTCACACTGATAAAAACACCTTAACCATTTTGTGCGAAAATGAAGTTCAAGGTTTGCAGGTGCTATCCAAAACAGGCACATGGATTGACATAGTGATACCTGAGAATTGCTTTGTTGTTATTGTTGCTGATGCATTGAAGGCATGGAGCAACGGAAGGCTTCATGCAGCAACCCATAGAGTGATGATGAGTGGAGAGAAAGAAAGATACACTTTTGGAGTTTTTGCGACACCAGATGAAGAGATGAAGATTGAAGTGCCTCGTGAATTGGTAGATGACAAAATTCATCCTCTTCGTTATCGTCCATTTCATTATAGAGAGTTTTTCAATTTTTTTGCTTCAAATCACAGAAACGAAAATGCACTTGAGATGTTTGCTGGTTTTTGA 939 0.3887 MTISCFDFWKGGMIVDEGSEEWKKMSMKVKEACESDGCFLLRCDEINSKGAHKELFKNMKALFHLPQETKQQYISPKPFRSFSLYNYMDTHYESFGLDDVLLSTSVDTLANLMWPQGNSHFCETLKGMSLKMSEVSLVILKMIVEGYGLSQHHITYVENMKSSSDIRLNMYITDKSNEKKYKSNGHTDKNTLTILCENEVQGLQVLSKTGTWIDIVIPENCFVVIVADALKAWSNGRLHAATHRVMMSGEKERYTFGVFATPDEEMKIEVPRELVDDKIHPLRYRPFHYREFFNFFASNHRNENALEMFAGF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02912 312 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 262 IPR005123 -
Vimu10g02912 312 Gene3D - 12 310 IPR027443 -
Vimu10g02912 312 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 292 - -
Vimu10g02912 312 Pfam 2OG-Fe(II) oxygenase superfamily 171 261 IPR044861 -
Vimu10g02912 312 SUPERFAMILY Clavaminate synthase-like 16 301 - -
Vimu10g02912 312 FunFam 2-oxoglutarate-dependent dioxygenase DAO 1 310 - -
Vimu10g02912 312 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 84 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02912 Vimu-Chr10 40203585 40204690 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02912 186 292 Glycosyltransferase AT5G59530 29.091 1.56e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02912 - - gmx:100817159 382.489