Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02889 ATGGAGCAAACCCCTCTTGTTCTGGCTACTTTGCTTCTTGTTGCATTCGCTCTTATCCAAGGTAAGCCCATCACAGAAGCACAAGCAACTGCAAGAATCGGTGTTAATTATGGAACAGTCGCAAACAACCTTCCTCCACCTTCTAAGGTAGCAAAATTTCTCTCCAAATCCACCACGATCACCAGGGTCAGAATCTTCGACGCCAACCCTGAAATTCTACACGCTTTTGCCAACACCGGCATACAGGTAACCATAACTGTCCCCAACGACCAAATCCCCCAAATAACTAACTTAACCTTCGCACAACAATGGGTCAAAACCAACGTCCAACCGTTCCTCCCCGCCACCAAACTGATCCGAATCCTCGTCGGCAACGAAGTCCTCTCCACCGCCAACAAACTCCTCATCAGCAACCTCGTACCCGCCATGCAAACCCTTCACGTGGCCCTCGTCACAGCGTCGTTGGACAACAACGTTAAAGTCTCAACTCCACACTCTTTGGGCATTTTGTCAAACTCAAGCCCTCCCTCATCGGCCAAGTTCAGACAAGGCTACGACATGCACATTATCAAACCCATGCTTAGTTTTCTCAAAGATTCCGATGCACCCTTCATGGTTAACCCTTACCCTTTTTTCGGATCCTCTGCCACCAACCTCGATTACGCACTCTTTCGGACCAATTCGGGTGTATTTGACGACAACACCAATCTCCGATACACCAACATGTTGGACGCGCAACTCGACGCTGTTTATTCCGCGCTGAAGGTTTTGGGCTTTGAAGACGTTGAGATTGTCATTGCCGAAACGGGCTGGCCCTCCCAAGGTGATCCGGCCCAAATTGGTGTTGACCGGAAGATTGCTTCTGAGTACAATGGAAATCTCATCAGACACGTCAATTCTGGGATTGGAACACCACTCATGCCTAACAGGACTTTCGATACCTATATTTTTGCTTTGTTTGATGAAAATTTAAAGCCCGGCCCAACTTGTGAGAGGAATTTTGGGCTCTTCTGGCCCAATATGACTCTCGTTTATGACGTTCCAATAATGAGGAACGATGCAGCTGTAGTTGGTGATAGACATTATTATAAAGCTTTTTTCTCATTCATGATCGTGTTCAACTTCATTCGTACATCATGGGTTTAA 1146 0.4703 MEQTPLVLATLLLVAFALIQGKPITEAQATARIGVNYGTVANNLPPPSKVAKFLSKSTTITRVRIFDANPEILHAFANTGIQVTITVPNDQIPQITNLTFAQQWVKTNVQPFLPATKLIRILVGNEVLSTANKLLISNLVPAMQTLHVALVTASLDNNVKVSTPHSLGILSNSSPPSSAKFRQGYDMHIIKPMLSFLKDSDAPFMVNPYPFFGSSATNLDYALFRTNSGVFDDNTNLRYTNMLDAQLDAVYSALKVLGFEDVEIVIAETGWPSQGDPAQIGVDRKIASEYNGNLIRHVNSGIGTPLMPNRTFDTYIFALFDENLKPGPTCERNFGLFWPNMTLVYDVPIMRNDAAVVGDRHYYKAFFSFMIVFNFIRTSWV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02889 381 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Vimu10g02889 381 Pfam Glycosyl hydrolases family 17 33 347 IPR000490 GO:0004553|GO:0005975
Vimu10g02889 381 Gene3D Glycosidases 31 355 - -
Vimu10g02889 381 SUPERFAMILY (Trans)glycosidases 33 347 IPR017853 -
Vimu10g02889 381 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 349 IPR044965 GO:0004553|GO:0005975
Vimu10g02889 381 FunFam Glucan endo-1,3-beta-glucosidase 3 32 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02889 Vimu-Chr10 40053732 40056870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02889 28 353 Miscellaneous Gene Families AT3G46570 56.535 2.38e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02889 - - gmx:100795377 591.652