Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02886 ATGCGGTTAATATTGTGTGACTTGTTTATTTCTTTGGGTATCTTCGTTATCGTCTTTTTTGTTTCTCCGTTCAACATCCTATTAGGGTTTTCACTGTTGCACTCAGCTTTCAGCGCCGCTCATACATACCACTTCCGTTCACTTCATCAAGGGCTGGTATTGTGTATTCCGTTGAACGAGACTGTTGTTGTGGTTGCTGTAGTATTAGGAATGTCTAACAATCTGGTTTCAGAGCCCATGCCCAGTATGCAAATGGCTCGTTTGGAGCCGCTTATGAACAAGATTGATTCGTCAGGTAGACAGATGGAAATGGGGATTTTGGTTCCTGTGTCCAGTGATATTGTTTCACAGCCTATGGGAACCTCAAATGAACATGTTGGGTTATTGAGAGCTGTGCCTGGTGAATCTAGGTCTCAGGGCATGCCCCTTTCGACCATGCAGAGTGGGCGAGTAGAAGCACAAGCGAATAATCCAGGAATGCATCAAATTCATTACCCTAACCAACAGTCCATGCAAATGGGGAGGCTTCCAAATAGCGCAGGGCCTCAGCAGCAGCAGCAGCCAGCAACTCCCAAGCGTAAGGCGCCAACGGAACTATCCTCCAGTAGTTCCTTTAACAAGCGGGCTGTACAAATGGGAAACAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAGAGGTTCTCCGCATATGCATATGCAATCCTCGTCAATTGCCTCCAGGACACAGCATTCGGCAGCTTCTAGCAAGAGAAAAACACAGTTTGATAGCACCTCCGGTAAAGCCAGTACACCTCGGTCTGTGAATTCTAAAAGTCAGAATACTCAAATAAAGCAGTCCTCCAAGGTTCAAACTGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAACAAGGTAAACCTCAGATCCCAAACAATAATACACCAACTGATGGTGCTACCAATACTCAAGGTAAATTAGAGAACAACTCTCAATGTTCTGGATCAACACCTACATCCATCAATGGTCCACTGGAGCAAAGTATTTCTCAATCAGTTAATTCCTCTTTTGCTGAGGCTGATTCAGTTGGGCGGGTGGAGACAGAGCACATGCAGAGTACATCATTCAAAGAAGATTTTCCAGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCAAACAATGAAAGCATACTGACTTCTATGCAAGTCTTGAACTGTGATAAGCAAGATTTCCAGTCATGTTACACTTTGACTACTGATGATGTTCCTTTTAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTTGACGTTGGAAATCAAAAGGAAAGTCAAACTAATATAGAGCAGAGATCAGAACCTGAGGAAACAGGTGAAGGTTGCAAGGAGGAGGCCCCTTTACCTGAACTTTTGGCATCAAAAATCGAAGCAGAACTGTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTTAATTTAAAAGATCGCAATAACCCTGAACTTAGAGAAAGGGTTATGTTTGGTCAAATTCCTCCTGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAAGAGCTCTCTGAGTGGCGTATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTAATTCAGATGTTGATTTTAGGCGTTTGGTCAAGAAGACTCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTATCTGTTGAGGAGGTTTCCGGTGGCACAACCTCAGTGGCTAGAAGCCAAACAGAAAAAAAGGATGTGGAAGGCACTTCTTCAAAACCTGATGTGAACATTGATGCTGAGAAGCGCAATTTACAGAAGGATGATACATTTTCCATTACCATTTCATCCACCGACGGCACTGATCCAATGCAGGGCCTTATGACTGATGATGCCTTGAAGGACCCTGATTTTCTTCCACCAATTGTCTCTCTCGATGAATTCATGGAATCTCTTCATTCTGAGCCACCTTTTGAAAATCTAGAATCTGGGAAAGTGACACCTGCTTTAGACAAGGATGATTCAGGGGTTGGTTCTAAATCAAAATCTTCTGATTTAACTTCAAATGAGCAAGCTGTTGTCACTCCTGACAAGTTTCAAAGCACACGTGTAAATTCAGATGCTGAAAAGGAGAAAAAGACTGATGCTGAATCTGGGACCATTTCTTCTGATACGGGATACAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCGTACCAAGGAAAGGTCAATCGAAAATGTGAAGCCTGCACCCAGCGATACCGAGTTCAAAGGCAATCAGTCTCATGCCGAAGGGAGATACGGTAATGATAATAAATATATGAAGGATGCAGTCCCCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCCAATATATCTACCACTCAGTCTGTCATAAGCTTCTATAAGAGTGGCGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTAGATGCATTTGAGAAATTTCTTCAAGATCTTCGATTGGCTAGGAGTCGTGCAATCATGGTTTCACATTTCCTTTCGAAAGAGTTGGACGAGCAATCAACTCTACGCGAGGTGGCGGACTCGTATATTTCGGACGAGAGAGTAGGATTTGCAGAGCCTGTGCCTGGAGTAGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACGTCTATATCACCCACCACTGCTACTCACCACAAACACAGCTCTAAAAGACAACAATACTTCAGTAGGAGACATCAAGATATAAACGTGAATGCCAATTCCACCCATAAAGCAGTACCCGCTACGGTCCTTAAGACCATTGAGAATGGGAATGATGACGATGATGATGTTCCTCCTGGATTTGGGCCACCTGCTGCCCGAGTCGAGGATGACCTGCCGGAGTTTAATTTCTCCAGTAGTTCGATTCCACCACACTTAGCCCAAAAACCAAAGGAACTATCAAATATGGTTACATCACACTCGGTTAACCCAGCCCCACCACCTGCACGCCCTGTAGAACAAATGAGAGAACTTGTATACAAATATGGGCAAAACAAACCAAGTGCACCTTCAGTAAACTGGCAGGATAAATTTGGGGGGACAATTCAACCTTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAACATCCCAGAATCAGTTTCTTCCCCAACAGACGATGCATAACTTTCATCTTCGACCGCACATTATGAATCAATCATTACCGGGTTCACAACAACAGCCTATTATGACACCACAATATCTGCAACCCCCGGTGAATGTGACTCATACCCAAAGAAATTTTGACCCTCAATGGGTTCCTTCTTCCCAGGCTAGCAACCTACAGCCAAGAGGTGGACCTCCCTACGGAGCGCCTTCGCAAGGCACTACCTGGCCTCAAAATGTGTCTAGAAGTAGGGGATTTTAG 3657 0.4356 MRLILCDLFISLGIFVIVFFVSPFNILLGFSLLHSAFSAAHTYHFRSLHQGLVLCIPLNETVVVVAVVLGMSNNLVSEPMPSMQMARLEPLMNKIDSSGRQMEMGILVPVSSDIVSQPMGTSNEHVGLLRAVPGESRSQGMPLSTMQSGRVEAQANNPGMHQIHYPNQQSMQMGRLPNSAGPQQQQQPATPKRKAPTELSSSSSFNKRAVQMGNRPWLQQVPNASNRGSPHMHMQSSSIASRTQHSAASSKRKTQFDSTSGKASTPRSVNSKSQNTQIKQSSKVQTESSESVRSKMRESLAAALALVSQQGKPQIPNNNTPTDGATNTQGKLENNSQCSGSTPTSINGPLEQSISQSVNSSFAEADSVGRVETEHMQSTSFKEDFPEKYKDYEAGSTNASNNESILTSMQVLNCDKQDFQSCYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDVGNQKESQTNIEQRSEPEETGEGCKEEAPLPELLASKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSEWRIAKAEELAQMVVLPNSDVDFRRLVKKTHKGEFQVEVEHEDNVSVEEVSGGTTSVARSQTEKKDVEGTSSKPDVNIDAEKRNLQKDDTFSITISSTDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLESGKVTPALDKDDSGVGSKSKSSDLTSNEQAVVTPDKFQSTRVNSDAEKEKKTDAESGTISSDTGYSGSQADMKSTDGRTKERSIENVKPAPSDTEFKGNQSHAEGRYGNDNKYMKDAVPTKGECLWEGMLQPNISTTQSVISFYKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRLARSRAIMVSHFLSKELDEQSTLREVADSYISDERVGFAEPVPGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSISPTTATHHKHSSKRQQYFSRRHQDINVNANSTHKAVPATVLKTIENGNDDDDDVPPGFGPPAARVEDDLPEFNFSSSSIPPHLAQKPKELSNMVTSHSVNPAPPPARPVEQMRELVYKYGQNKPSAPSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFLPQQTMHNFHLRPHIMNQSLPGSQQQPIMTPQYLQPPVNVTHTQRNFDPQWVPSSQASNLQPRGGPPYGAPSQGTTWPQNVSRSRGF 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 308 384 - -
Vimu10g02886 1218 Pfam SPOC domain 820 962 IPR012921 -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 773 787 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 171 210 - -
Vimu10g02886 1218 Gene3D - 462 554 IPR036575 GO:0006351
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 740 755 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 461 482 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 216 289 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 717 739 - -
Vimu10g02886 1218 ProSiteProfiles TFIIS central domain profile. 470 579 IPR003618 GO:0006351
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 1016 1038 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 618 645 - -
Vimu10g02886 1218 SUPERFAMILY Elongation factor TFIIS domain 2 487 555 IPR036575 GO:0006351
Vimu10g02886 1218 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 184 1045 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 646 661 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 171 296 - -
Vimu10g02886 1218 SMART mid_6 454 562 IPR003618 GO:0006351
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 692 813 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 368 384 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 468 482 - -
Vimu10g02886 1218 CDD SPOC_TFIIS 824 962 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 1203 1218 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 1174 1218 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 310 366 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 756 772 - -
Vimu10g02886 1218 Pfam Transcription factor S-II (TFIIS), central domain 473 567 IPR003618 GO:0006351
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 603 670 - -
Vimu10g02886 1218 MobiDBLite consensus disorder prediction 1174 1193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02886 Vimu-Chr10 40023993 40029925 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02886 - - vum:124825671 2249.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02886 10 40023993 40029925 Vimu10g02886 10 40023993 40029925 ECH