Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02857 ATGCTTCCGGTAACCACGGCTTCTTCCGATTTTGCTACAGCTGCATCTACGACTTCAGCTTTTTCTTCTGGTGGTGGTGATCCTCTACGAGTTCGAAGAGTCAGATGGTCTTTTTCTTGTAGTAGTTTCATGCTAAGGTTCAATCTTCTGAGTGTGCTTGAATTCCAAGACACACAGTGCAGGTGGTTCCAATTGAGAGCGCAGAGTCACCGCGCAACCATGCAGGCCGCAGAAGAAGGTGGTGACAATAAGCCAATGGGTTTTGATGGAAGCGATTTGGAGAAAGAAATTTCCAAGCTGCGCGGGAGATGGGAACTCGCGTCTATTCTCAATTTTTTGGAGGTGTTTAATCCGATACTTGGAGATGATTTGAAGCTTTCTGCCGAGGATATTGAGATTGGGCTTGTTAAGCCTGACGCTTCGCTTGCTCGCCTTCATATTCAGCTTTTGAAGGGAATGCCACCTGTGAGTAAAACACTGGAGGACTCTGACAAATGGGTGACTGCACTCTGTAAGAAACTTACTCTGTGGTGGCCATGGGTTGCCGAGGGGGAGATTCCACTTGTACCATCTAAAGGGCAGGAGATATCCAAGTACAAGGAAATTGATCCATCAGATCGTTTACTACTGCTTAAAGCGCTTTGTGAAGTTAGAGCTGATCAACATGATGCAGTGTCGTATATAAACAATGCTTTAAAAGAAAGAACCCAAATCTCATCTTTTCGCAAAGATGCCTTAGGAAGAGATAGAACTGGCACATCTTACTGGTACGATGCAACTTCAAAAGGCCAGAGTCACAGATTGTACAGGGAAGTTATTAAATCAGACTCAATTCCAAAAGATGAGGGTACTAGGCGTTTATCACTCCCCACCATTCAGTGGGAAACCCTTGCTTCCAATCTTGAAGAATTTTCAGAAGTAGCTGAAAAGTTCTCGCTCAGCAAGTCTTTTGTGGAAGTTTCTATTAGTTCAAAGCTTCAGAGCAATGCTATTCCTGCTCTTGAAAAGCTTCGGGAGAAGAAAGAAAAAGCAATAAAGAAAAAGCAGAGAAAGGATATGCTGTTAAAGGATATTCAAAACTCCTATTGTTCTGGAAATACACGTGCCTGTCGCACTAGAAGACCTATTTGTTATACATTTGAAGCTTATGATCGAACAATAAAGGAGGCAATACAGCTGACAAATAAAAAGAAAACATATGTTGCTGACCAAGACAAAACCAGACAATCAGAAGATCAATCCAACACAAAAAATGTATCAACAGGCAGTGATTCTGAGCGGGATATCATGCAAATATCTGATGATGATGATGATGATGTTGATGCTGGCTATGAAGTTGAGAATGATGGTATCAGCGAGGAGGAGAATTGTGTTGATGGAGAGTTAGTCAACTCAGAAGCTCCCTCAAGCCATGCAGTTTCTTATCCCAAGGGGGTTCGCTGCAGCAAGCGGCTAGCTGGAGTTCCTAGCCACGCCATTTTAGAAAGCAGAGGCTTAACTACTAAGCAAACATTGAGACAGAGACCCACTCGCAATTCTGCTTTAGAATCTATCATGATATTGGATTCAGAGGATGAAGCACATGATGAGAAGACAGATTTGTCAGAGTCTATTTAG 1617 0.428 MLPVTTASSDFATAASTTSAFSSGGGDPLRVRRVRWSFSCSSFMLRFNLLSVLEFQDTQCRWFQLRAQSHRATMQAAEEGGDNKPMGFDGSDLEKEISKLRGRWELASILNFLEVFNPILGDDLKLSAEDIEIGLVKPDASLARLHIQLLKGMPPVSKTLEDSDKWVTALCKKLTLWWPWVAEGEIPLVPSKGQEISKYKEIDPSDRLLLLKALCEVRADQHDAVSYINNALKERTQISSFRKDALGRDRTGTSYWYDATSKGQSHRLYREVIKSDSIPKDEGTRRLSLPTIQWETLASNLEEFSEVAEKFSLSKSFVEVSISSKLQSNAIPALEKLREKKEKAIKKKQRKDMLLKDIQNSYCSGNTRACRTRRPICYTFEAYDRTIKEAIQLTNKKKTYVADQDKTRQSEDQSNTKNVSTGSDSERDIMQISDDDDDDVDAGYEVENDGISEEENCVDGELVNSEAPSSHAVSYPKGVRCSKRLAGVPSHAILESRGLTTKQTLRQRPTRNSALESIMILDSEDEAHDEKTDLSESI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02857 538 MobiDBLite consensus disorder prediction 400 439 - -
Vimu10g02857 538 Coils Coil 331 354 - -
Vimu10g02857 538 MobiDBLite consensus disorder prediction 413 427 - -
Vimu10g02857 538 PANTHER REMODELING AND SPACING FACTOR 1 77 470 IPR028938 GO:0006355|GO:0031213
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02857 Vimu-Chr10 39840469 39847520 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02857 - - tpra:123899543 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02857 10 39840469 39847520 Vimu10g02857 10 39840469 39847520 ECH