LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g02855	ATGATGATGGCAGGGACCCTAACAAATACTTTCCCCTCTTTCCCATTCACAACCAAACCCCAAAACCCACTGACCACACACTCCACTAACCCATCTTTCCCTTCCTCTCGCCTCCGCCACCGTGCCATTTTCGCGGTTGCCAACCCGGTTCAACCTCCACAAATAGCCACCGACTCAACCACTCCGGGTCAGTACCGAGTCGACGTGCTCTCTGAATCGCTCCCCTTCATCCAGAAGTTCCGCGGCAAGACCATAGTCGTCAAGTACGGTGGCGCCGCCATGAAGTCCCCGGAGCTTCAGGCTTCTGTAATCAACGACCTGGTCCTCCTATCCTGCGTGGGCCTCCGCCCCGTCATGGTCCACGGCGGCGGCCCCGAGATCAACACCTGGCTTGGACGCCTTAACATCCCCGCTGTCTTCCGCGACGGCCTCCGCGTTACCGACGCCGATACCATGGAGATCGTCTCCATGGTTCTCGTCGGCAAGGTCAACAAAACCCTCGTCTCCCTCATCAACAAGGCGGGGGCCACCGCCGTAGGTCTCTCCGGCCTCGATGGCCGCCTCCTCACTGCCCGTCCCAGCCCCAAGGCCGCCGATCTAGGCTTCGTCGGCGAGGTCGCCAGAGTCGACCCCGCAGTCCTTCGCTCCCTCATCGACACCAACCACATCCCGGTCGTCACCTCCGTCGCCGCCGACGAGTCCGGACAGCCCTACAACATTAACGCCGACACTGTCGCTGGAGAACTGGCTGCAGCGCTTGGCGCGGAGAAGCTTATTCTGCTGACAGACGTGGCGGGGATCCTGGAGGATCGGAACGATCCCAACAGCTTGGTGAAGAAGATTGACATAAAAGGAGTAAAGAAAATGGTTGAAGAGGGAAAAGTTGGAGGTGGAATGATACCTAAGGTTAATTGTTGCGTGAGATCGCTGGCACAAGGGGTTACTACCGCGAGTATTATTGATGGTAGGGTTCCTCACTCTTTGTTGCTCGAGATTTTAACTGATGAAGGTGCTGGAACTATGATAACTGGCTAA	1035	0.5729	MMMAGTLTNTFPSFPFTTKPQNPLTTHSTNPSFPSSRLRHRAIFAVANPVQPPQIATDSTTPGQYRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSPELQASVINDLVLLSCVGLRPVMVHGGGPEINTWLGRLNIPAVFRDGLRVTDADTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGLDGRLLTARPSPKAADLGFVGEVARVDPAVLRSLIDTNHIPVVTSVAADESGQPYNINADTVAGELAAALGAEKLILLTDVAGILEDRNDPNSLVKKIDIKGVKKMVEEGKVGGGMIPKVNCCVRSLAQGVTTASIIDGRVPHSLLLEILTDEGAGTMITG	344

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g02855	344	Pfam	Amino acid kinase family	83	320	IPR001048	-
	Vimu10g02855	344	Gene3D	-	60	344	IPR036393	-
	Vimu10g02855	344	CDD	AAK_NAGK-C	69	342	IPR041727	-
	Vimu10g02855	344	FunFam	Acetylglutamate kinase	61	344	-	-
	Vimu10g02855	344	SUPERFAMILY	Carbamate kinase-like	66	343	IPR036393	-
	Vimu10g02855	344	NCBIfam	acetylglutamate kinase	84	319	IPR004662	GO:0005737
	Vimu10g02855	344	PIRSF	ArgA	57	344	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Vimu10g02855	344	PANTHER	N-ACETYLGLUTAMATE SYNTHASE	51	343	-	-
	Vimu10g02855	344	PRINTS	Glutamate 5-kinase family signature	114	128	IPR001057	GO:0005524\|GO:0016301
	Vimu10g02855	344	PRINTS	Glutamate 5-kinase family signature	241	268	IPR001057	GO:0005524\|GO:0016301
	Vimu10g02855	344	PRINTS	Glutamate 5-kinase family signature	294	314	IPR001057	GO:0005524\|GO:0016301
	Vimu10g02855	344	Hamap	Acetylglutamate kinase [argB].	82	337	IPR037528	GO:0003991\|GO:0006526
	Vimu10g02855	344	MobiDBLite	consensus disorder prediction	15	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g02855	Vimu-Chr10	39835424	39838258	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g02855	K00930		-	gmx:100780093	581.637

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g02855	10	39835424	39838258	Vimu10g02855	10	39835424	39838258	ECH