Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02843 TTGGAGAGTAGAGTGACAGCAAAAGAGAGTGCGACAGTGAAGAGAGAAGAAAAGCGGTTTGGTCCAACGCAAGGCAAAGAAATGGAAGGGTTGTCGTCTTCAATGGCGATTGCGCAAAAAACATGGGAACTCGAGAACAACATCATCCCCATGGACACTCCGGGAGCCGCCTCATCCTCCTCCGCCGCAACCGCCACCAACGCCGACGATTCTATATTCTACTACGACGAGGCTGGGCAGAATGAGTTCCAGCGCGACAAACCCTGGGCCAATGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTACTCAAGATGGTCGTCCACGCACGCTCCGGCGGAACTATCGAGGTCATGGGCCTCATGCAGGGAAAGACCGATGCCGACGCCATCATCGTCATGGACGCCTTCGCTCTCCCCGTTGAAGGCACGGAAACGCGCGTTAATGCTCAGGCAGATGCGTACGAGTATATGGTCGATTATTCCCAGACAAACAAACAGGCTGGAAGGTTGGAAAATGTTGTGGGATGGTATCACTCTCATCCTGGGTATGGGTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCGGTTGTGATTGATCCCACGAGGACTGTTTCGGCTGGGAAGGTTGAGATTGGGGCTTTTAGGACTTACCCTGACGGGTATAAGCCTCCGGATGAGCCTATTTCTGAGTATCAAACTATCCCTCTCAATAAGATTGAGGACTTTGGTGTCCACTGTAAACAGTATTATGCCTTGGATATCACTTACTTTAAGTCATCTCTTGATTCACATCTCTTGGATCTTCTGTGGAACAAGTATTGGGTGAATACACTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCGACACCTAGAAAGAAAGAGGTGAGTAATTTCATCCATTTATTAGAAGTTCTGTATCATTGTACTGAGAATTGCCCAACATACAGCTTTGCTGAGTGTGGGGCTGACCCATTTTTGACTCATTGGCCTGGTGGGGTTTGGTTGGACTGTCCATTTTGA 1161 0.4953 MESRVTAKESATVKREEKRFGPTQGKEMEGLSSSMAIAQKTWELENNIIPMDTPGAASSSSAATATNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEVSNFIHLLEVLYHCTENCPTYSFAECGADPFLTHWPGGVWLDCPF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02843 386 Gene3D Cytidine Deaminase, domain 2 31 301 - -
Vimu10g02843 386 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 96 207 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu10g02843 386 CDD MPN_RPN11_CSN5 88 345 - -
Vimu10g02843 386 ProSiteProfiles MPN domain profile. 99 236 IPR037518 -
Vimu10g02843 386 MobiDBLite consensus disorder prediction 1 32 - -
Vimu10g02843 386 SUPERFAMILY JAB1/MPN domain 98 236 - -
Vimu10g02843 386 SMART pad1_6 98 235 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu10g02843 386 Pfam Cop9 signalosome subunit 5 C-terminal domain 295 331 IPR040961 -
Vimu10g02843 386 FunFam COP9 signalosome complex subunit 5 32 301 - -
Vimu10g02843 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 84 344 - -
Vimu10g02843 386 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02843 Vimu-Chr10 39712443 39714347 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02843 K09613 - gmx:100817371 625.55