Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02820 ATGGCAGGGTTAAATTTTGAAGCCACATATACTGACAACCATGATATTCTGAAGATACTTGAAGCTGAAGGTGTTGAGTTCCTTTTATCTTCTGAAGGAAAGGTACCTGTGTCAGAATGCAATGGGAAAGTCATCTGCATATTTTTCAGTGCAAACTGGTGCAGGCCTTGCAGAGCTTTTACTCCCCATCTTCTTGAACTTTATGATACACTGAGAAAGAGAGGAAAAAATCTGGAGATCATCTTCATCTCCTTTGACCGTGATGAGGATGGATTTAAAGAGCACTTCAAGAGCATGCCATGGCTAGCTGTCCCATTTGATGTAAATTTGCACAGAAGACTGATTGACAGATACAGAGTTGATCGAATCCCATCATTCATTCCATTATGTTCAGATGCCATAACTGTTGAAGAAGACTTGATTGGCTGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACTAGGAAGAGACACGAGGAACTGAAAGCCATGGATAAAAGGAAGCGTGAGGAAGCAAACTTGGAAGAATTACTGGGACATGAAGAACGCCACTTTCTCATCTCTGGAGATGATAAGAAGGTGCCAATATCTGAAGTTGTTGGTAAAACCATAGGCCTGTATTTTTGTGCCTACTGGTCTCCTCCTTGTTCTGCCTTCACTGTCCAACTTAGAGATGCATACAACAAACTCAAGGCTGCAAAAGGAGACTGCTTTGAGATTGTTTTAATATCAACAGACAGGGACCTTGAAGAATTCAATGTCAACAAAAGTAGTATGCCATGGCTTGCTGTTCCATATGAGGATAGGACAAGGCATGATCTTAGAAGAATCTTCAATATAAAGGGCATTCCTGCTTTGGTTTTCATTGGAGGAGATGGCAAAGTAATCAGTGCGAATGGCAAGTTTATGGTCTCTTCATATGGGGCAGAAGCTTTTCCCTTTACCGAATCACGGATAAGAGACCTAGAAGCAGCTCTGAGAAAGGAAGGAGAGGCTCTGCCAAAGCAGGTTGAGGATGTCAAGCATGAACATGTGCTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCCTGTAGAAAGCAAGGGAAGTTCTGGACATTTTCTTGTGATGTTTGTGACTATGACCTGCACCCAAGTTGTCTAGAAAAGGCCAACTAG 1164 0.4192 MAGLNFEATYTDNHDILKILEAEGVEFLLSSEGKVPVSECNGKVICIFFSANWCRPCRAFTPHLLELYDTLRKRGKNLEIIFISFDRDEDGFKEHFKSMPWLAVPFDVNLHRRLIDRYRVDRIPSFIPLCSDAITVEEDLIGCIEDYGADAFPFTRKRHEELKAMDKRKREEANLEELLGHEERHFLISGDDKKVPISEVVGKTIGLYFCAYWSPPCSAFTVQLRDAYNKLKAAKGDCFEIVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFNIKGIPALVFIGGDGKVISANGKFMVSSYGAEAFPFTESRIRDLEAALRKEGEALPKQVEDVKHEHVLKLDMAKAYVCDSCRKQGKFWTFSCDVCDYDLHPSCLEKAN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02820 387 PANTHER THIOREDOXIN 7 335 - -
Vimu10g02820 387 Gene3D Glutaredoxin 178 317 - -
Vimu10g02820 387 ProSiteProfiles Thioredoxin domain profile. 177 325 IPR013766 -
Vimu10g02820 387 SUPERFAMILY Thioredoxin-like 34 130 IPR036249 -
Vimu10g02820 387 CDD TryX_like_TryX_NRX 186 315 IPR045870 GO:0004791
Vimu10g02820 387 Pfam C1 domain 342 382 IPR004146 -
Vimu10g02820 387 Pfam Thioredoxin-like 42 127 IPR012336 -
Vimu10g02820 387 Pfam Thioredoxin-like 202 296 IPR012336 -
Vimu10g02820 387 ProSiteProfiles Thioredoxin domain profile. 16 170 IPR013766 -
Vimu10g02820 387 SUPERFAMILY Cysteine-rich domain 335 383 IPR046349 -
Vimu10g02820 387 SUPERFAMILY Thioredoxin-like 187 297 IPR036249 -
Vimu10g02820 387 Gene3D Glutaredoxin 20 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02820 Vimu-Chr10 39532419 39534213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02820 K17609 - gmx:100778160 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02820 10 39532419 39534213 Vimu10g02820 10 39532419 39534213 ECH