Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02814 ATGGATCAAAAAGTCGATTTCAGCGCTCCCCATTCCATGGGAACCACTATCATCGGCGTTACTTACAAAGACGGTGTCGTTTTAGGAGCCGATTCTCGAACCAGCACTGGAGTGTATGTTGCCAACCGGGCATCAGACAAAATTACACAGCTCACTGATAATGTCTATGTCTGTCGTTCTGGATCGGCTGCAGATTCTCAGATTGTATCTGACTATGTGCGTTACTTCCTCCATCAACACACGATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCGGCTTCTCTCATATAACAACAAGAATTTCTTAGAGACTGGGTTAATTGTTGGAGGTTGGGATAAATATGAAGGTGGACAAATTTTTGGCGTCCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATTGGAGGATCTGGCTCTAGTTACTTGTATGGTTTTTTTGACCAAGCCTGGAAAGAGGGAATGAGCAAGGAGGAAGCTGAGGATTTAGTTAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGCGCCAGTGGTGGGGTGGTCCGAACCGTCATAATAAACTCAGAAGGAGTGACCAGGAATTTCTACCCTGGAGACCAACTTCCATTATGGCATGAGGAACTGGAGCCTCATAACTCTTTGCTTGACATTCTTGGTGCCCCAGAGCCGATGAGCATAGGAAGAAGAGAAAGAATGAGCGTAAACGTGAATTGCGTGGGTGGCGAAACTCACAACGTCTTCGTCTACGGTAGCCTTCTGGCCGATGAGGTTGTCCATACCCTCTTGAAGCGCCTTCCTCCGACCACACCTGCCATCCTTCACGACCATCACAGGTTTAAGATCAAAGGTCGCGTTTATCCCGCTATTCTCCCCGTCCACAATGACAAAGTTAATGGCAGGGTACTTCTTGATTTATCGGGAGTTGAACTGCATATTTTAGATGAGTTCGAGGATGATGAATATACTAGAACTGATGTTGAGGTTTTCTTGGCGGACAAGTCTGAAAAGATGCAAGTTTACGCATATGTTTGGGGCAATAGAAATGACCCCAACTTATATTCAGAGTGGGACTTTGAGGAATGGAAACAAATTCACATGAACGATTTCGTTAAGATGACCAATAGCTTTATGGAAGAATTAGAATCGCCAGAATCCAAGCCAAGAGTGCAGACTTATGAAGCCTTCTACAAGGAAGAAAAGGATAAGCCACTTCAACCTTGA 1242 0.4501 MDQKVDFSAPHSMGTTIIGVTYKDGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIFGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPHNSLLDILGAPEPMSIGRRERMSVNVNCVGGETHNVFVYGSLLADEVVHTLLKRLPPTTPAILHDHHRFKIKGRVYPAILPVHNDKVNGRVLLDLSGVELHILDEFEDDEYTRTDVEVFLADKSEKMQVYAYVWGNRNDPNLYSEWDFEEWKQIHMNDFVKMTNSFMEELESPESKPRVQTYEAFYKEEKDKPLQP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02814 413 PANTHER METALLOPROTEASE TLDD 4 209 IPR023333 -
Vimu10g02814 413 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 250 374 IPR036568 -
Vimu10g02814 413 Gene3D - 237 357 - -
Vimu10g02814 413 Gene3D - 358 407 - -
Vimu10g02814 413 CDD proteasome_beta_type_6 15 202 - -
Vimu10g02814 413 FunFam Proteasome subunit beta 15 214 - -
Vimu10g02814 413 CDD GGCT_like 253 351 IPR013024 -
Vimu10g02814 413 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Vimu10g02814 413 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Vimu10g02814 413 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 6 204 IPR029055 -
Vimu10g02814 413 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vimu10g02814 413 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vimu10g02814 413 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vimu10g02814 413 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vimu10g02814 413 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Vimu10g02814 413 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 253 364 IPR009288 -
Vimu10g02814 413 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02814 Vimu-Chr10 39490729 39498819 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02814 K02738 - gmx:100793551 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02814 10 39490729 39498819 Vimu10g02814 10 39490729 39498819 ECH