Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02809 ATGTCTTCCTCTTATCTTCCTGCCACTACTGAGTCAATTCTTCTGGCAAACGAGGCCGCAAGCCCAACTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACACTCCTCACTAAGCATCTCACGGAAGAGAATAGGGGAGAGGATCTACGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCCAAGGCAAAAACTGCAAAGATTGTTAGGGGAATTATTGACTCAGTTGCTAAAATACCTGGGACGTCTGATCTCCAAATTGCACTCTGTAAAGAAATGGTGCAATGGACTCGTGCTGAGAAGCGTACCTTTCTGAGACAACGTGTTGAGGCAAGACTTGCAGCACTTCTGATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTTCTCTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTCCTTCTAGTTGACATAGACTTGCTGGAGAGCAAGCTGCATTTCTCCTTAAGAAACCTTCCTAAAGCAAAAGCTGCTCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGGGCCATAGATTTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTACAAAACTGCTTATAGCTATTTCTTTGAAGCTTTCGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTATTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGAGGAATTATTTCCTCTAAAGCAGGACTGCAATATCTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCCGATGCACACTCTAAGCGGTCCCTTAGGTTGTTTGAAATTGCTCTGCGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCATAGGCACCTTTCATCCTTGTACGATACCCTACTGGAGCAGAATCTTTGCAGATTGATTGAACCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCGTTGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGATGATCCCAAGACTGATGCTATATACCCTGCAACTCTAGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1269 0.4421 MSSSYLPATTESILLANEAASPTEAISILYRVLDDPSSSPDALRMKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02809 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Vimu10g02809 422 SMART PCI/PINT associated module 143 319 - -
Vimu10g02809 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 41 418 - -
Vimu10g02809 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Vimu10g02809 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Vimu10g02809 422 Gene3D - 46 421 - -
Vimu10g02809 422 Pfam PCI domain 285 386 IPR000717 -
Vimu10g02809 422 Coils Coil 126 146 - -
Vimu10g02809 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Vimu10g02809 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 20 128 IPR040773 -
Vimu10g02809 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Vimu10g02809 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02809 K03036 - gmx:100796188 755.362