Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02807 ATGGGGATAGCAGAAGTGTGCTCGAGGTTCATTGGGGACTTTTTACAAACATTTAAAAGCTCAGCACAGAGTTCGGTGTCTTCTGACGTTGATGGGAGTGAGCATGCATGGAAAGGTGAGAGGATGGTGAAGGTTGATGAGAAGATGGTGGGTGCCCTTGTAACAGTTTTTGGCATGGAAAGCAATGGAAGGATAAAGAAGGAGAGTGCAAGGGAAGTTGTGGAGAAGCTTGGTCTGGGTGAGTTGATGGATGATGAAGAGCCTCTGGAAGAGGTTCTTGGTGAGTTGGAAGACATGTCAAAGCGCAGTGAGTTGCTGCATGAAGCTTTTAAAATCTTTGATGAAGATGGAGATGGGTACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGATAAGGGTTGGGATATGAACGCCATTGAAAAGATGGTGAAGGTTGCAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTCATGATGATGGGGTAG 513 0.4483 MGIAEVCSRFIGDFLQTFKSSAQSSVSSDVDGSEHAWKGERMVKVDEKMVGALVTVFGMESNGRIKKESAREVVEKLGLGELMDDEEPLEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNAIEKMVKVADLNFDGKVDFGEFEFMMMG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02807 170 CDD EFh 106 169 IPR002048 GO:0005509
Vimu10g02807 170 PANTHER CALCIUM BINDING PROTEIN 102 168 - -
Vimu10g02807 170 Gene3D - 13 170 - -
Vimu10g02807 170 FunFam Calmodulin A 89 170 - -
Vimu10g02807 170 Pfam EF-hand domain pair 105 168 IPR002048 GO:0005509
Vimu10g02807 170 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Vimu10g02807 170 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Vimu10g02807 170 SUPERFAMILY EF-hand 61 169 IPR011992 -
Vimu10g02807 170 SMART efh_1 105 133 IPR002048 GO:0005509
Vimu10g02807 170 SMART efh_1 143 170 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02807 Vimu-Chr10 39435414 39436081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02807 106 168 EF-hand Containing Proteins AT4G20780 57.143 1.51e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02807 - - var:108321834 278.87