Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02774 ATGGGTTACATCCACTATGGAAGAAATCTCCGCCACATATTCAGATTCAAATCCGCCACCGGCATCGTCACAAATTCTGCCAGATCGCAACCGAGGTCACGCGCTCCTTTTCTCGGGAGTGTTCCTTTCTCCACCAATTCGGACGCCAGAATGGTGCAGGACCTTCTAGCGGAGGTGGAGCGCGACAGACTCAGGGAGCGAAACGAGCGATTGAGACTCGGTTTGGACACAGCTGACATCGACGCGGAGCCCGAGCAAGATTACATGGGCGTGGAGCCACTCATCGCGAAGCTGAATAAGCAAAACGAGAAGGAATCGGGGGACTTGAATCGCTACGAGGAGCCCACGGACTCCGATGACGATTCCGACGAGGAAACGCGGGAAGAGGCCGACAAACGGCACCGCGACTTCGAGCGCAAGTTCGAGCGCCACCAGGACCTTCTCAAGAGCTTCACCGACGCCGAAACCCTCGATGACGCCTTCAAGTGGATGACCAAAATTGACAAGTTCGAGCACAAGCATTTTCGTCTACGCCCGGAATATAGGGTTATCGGCGAGCTCATGAACCTGCTCAAGGTGGTGACGGAGCAGAAGGATAGGTTTGTTCTGCAGAATAAGCTTAATAGGGCGTTGAGGTTGGTGCAGTGGAAGGAGGCCTATGATCCTGATAACCCTGCCAATTATGGTGTGATTCAGCGTGAGCAGCAGGATCCTGCTGCCGCGGCGGATGCACGGGAAGACGCTGAGTTGGAGAAGGAGAAGTTGATTGGGGAAGGGGATAATGCTGGTGATGATGATGAGGAGGAGGAGTTTGATGACATGAAGGAGAAAGATAATGTACTGCTGGCTAAACTTGAGGCTATTGACAGGAAGCTTGAGGAGAAGCTGGCGGAGCTTGAATATACGTTTGGGAGGAAGGGGAAGGCACTGGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAGAGAAAACCGCTTTACCGGAAGGGTTTTGACACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACCAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGAAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAGAAGGCCTACGAGAAATGCTTTCAGAATTTGCATTACGTAGAACGACATGAGGAGCATACAATTGCCCATGCAATTCAAACGTCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTCGAACAACAACTGGTATGAAAGCTGGCAGAACAGTGGAATCCATACTTCACTTGGCTGGTTTAAAGAATGTCAAGTCGAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTTAATGCGATTGAAACACCAAGGGATGTTCAAGAGAAGTTTGGTAGGACCGTGGTTGAGAAGTATCTGTTGTGA 1485 0.4956 MGYIHYGRNLRHIFRFKSATGIVTNSARSQPRSRAPFLGSVPFSTNSDARMVQDLLAEVERDRLRERNERLRLGLDTADIDAEPEQDYMGVEPLIAKLNKQNEKESGDLNRYEEPTDSDDDSDEETREEADKRHRDFERKFERHQDLLKSFTDAETLDDAFKWMTKIDKFEHKHFRLRPEYRVIGELMNLLKVVTEQKDRFVLQNKLNRALRLVQWKEAYDPDNPANYGVIQREQQDPAAAADAREDAELEKEKLIGEGDNAGDDDEEEEFDDMKEKDNVLLAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPARTTTGMKAGRTVESILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02774 494 Coils Coil 282 302 - -
Vimu10g02774 494 MobiDBLite consensus disorder prediction 235 274 - -
Vimu10g02774 494 SUPERFAMILY dsRNA-binding domain-like 332 402 - -
Vimu10g02774 494 Gene3D - 402 491 IPR014721 -
Vimu10g02774 494 Coils Coil 307 330 - -
Vimu10g02774 494 ProSiteProfiles S5 double stranded RNA-binding domain profile. 337 400 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu10g02774 494 Pfam Ribosomal protein S5, C-terminal domain 416 483 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vimu10g02774 494 MobiDBLite consensus disorder prediction 239 259 - -
Vimu10g02774 494 FunFam 30S ribosomal protein S5 402 493 - -
Vimu10g02774 494 FunFam 30S ribosomal protein S5 287 398 - -
Vimu10g02774 494 Coils Coil 127 147 - -
Vimu10g02774 494 MobiDBLite consensus disorder prediction 100 134 - -
Vimu10g02774 494 SUPERFAMILY Ribosomal protein S5 domain 2-like 406 484 IPR020568 -
Vimu10g02774 494 Gene3D - 288 398 - -
Vimu10g02774 494 MobiDBLite consensus disorder prediction 260 274 - -
Vimu10g02774 494 PANTHER RIBOSOMAL S SUBUNIT 119 490 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu10g02774 494 Pfam Ribosomal protein S5, N-terminal domain 337 401 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02774 K02988 - gmx:100809192 767.303