Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02771 ATGGCTCCTCCGCCGCAGCAGTCTCATCGATCGCCGTCACCATCACAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCACAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCAGGTGCTGATGATTCTAAGAGGGACCTCTTCAAGAAGGTGATTTCCAACATGACTATTGGTATTGATGTCTCGTCTCTCTTTGGCGAGATGGTAATGTGCTCTGCGACGTCAGACATTGTTCTGAAAAAAATGTGCTATCTATATGTTGGGAACTATGCAAAGGTCAATCCTGATCTTGCACTTTTGACGATTAATTTTCTACAAAGAGATTGCAAGGATGAGGATCCGATGATACGGGGTCTAGCATTGAGGAGTTTGTGTTCACTCCGGGTGGCAAATTTGGTGGAATATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAACAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTGTATCATATTTCAGCTTCCACCTGTATTGATGCAGATTTTCCAGCAATACTGAAGCATTTGATGCTCAATGATCCTGATACTCAGGTAGTCGCAAATTGTTTATCTGCTTTACAAGAGATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACACTTCTTAGCAAGCCAATTGTATATCACCTTTTGAATAGAATTAAGGAATTCAGTGAATGGGCACAATGTCTTGTGCTGGAATTGGTGAGCAAGTACATTCCGGCAGATAGCAGTGAAATATTTGATATGATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCCGTTGTCTTGGCAACTGTTAAATTATTTCTACAGTTGACTTTGTCTATGGCTGATGTTCATCAGCAGGTCTATGAGCGTATCAAAGCCCCTCTCTTGACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCGGTTTTAAGTCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCGGACTATAAACACTTCTATTGCCAGTACAACGAACCATCATATGTTAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTGGCGAATGAAAGCAACACCTATGAGATAGTGACAGAACTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGACCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTTTGGTGCTTGTGAAAGATCTGTTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGCAAAAATGTTCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGAGAATATTCTCAGGACATGCACGATGCTCCATATGTCTTGGAGGGTTTAGTGGAAAATTGGGATGAGGAGCATTCTGCTGAGGTTCGCCTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTAAAAAAGCATTAGGTGCTGCCTTGGCTGCTGGACTTGCTGATTTTCACCAGGATGTTCATGACAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCCGTGGCAGAGAGTGTGGTTAACCCGCCAAAGCAAGCAGTTTCAGTATTTGCTGATACCCAGAGCAGTGAAATCAAAGACCGCATATTTGATGAATTTAACAGTCTGTCTGTTGTATATCAAAAGGTAGCCAAACTATTCTCTTCCGAGAGCAAATTCATGCAGCCTTCTTATATGTTCACTGATAAGGAACATCGAGGGACAATTGAGTTTGCAGATGAAATTGGAAATCTATCTATTACTGCAGAATCTGTAGAGTCTGTTGTTCCAGCTCAGAGAGTGGAAGCAAATGACAAAGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGAACCTGGTAGCAATGGTTCTGCCTACAATGCTCCTTCCTATAATGGTTCATCTGCGCCTTCTACAACTTCACAACCACTTGCAGATTTGGCATTTCCAAGTACTGGCTTATCAGGTCAAGCACCAGCTTCTAGCTTGGCGATTGATGATCTGCTTGGTTTAGATTTTGCAGTTGGAACTGCAGCCACGCCTTCACCTCCTTCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCTATATCAGAGGAATATTCTCTAAGTCCTCAGGGAATCGCATCCTTGACAACTCCCCATGCACTCCTGCGGCACATGCAAAGCCATTCAATACACTGCATTGCATCCGGCGGTCAGTCTCCCAACTTTAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCATCGTCAATCTATCTTGTAGAGTGTGTAATCAACACATCATCAGCCAAGTCACAGATTAAAGTAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCAACATTATTCCAATCAGCCTTGTCAAAATTTGGTTTACCCTGA 2577 0.428 MAPPPQQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPAILKHLMLNDPDTQVVANCLSALQEIWTLESSTSEEAARERETLLSKPIVYHLLNRIKEFSEWAQCLVLELVSKYIPADSSEIFDMMNLLEDRLQHANGAVVLATVKLFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLEGLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETKKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKVAKLFSSESKFMQPSYMFTDKEHRGTIEFADEIGNLSITAESVESVVPAQRVEANDKDLLLSTSEKDEGREPGSNGSAYNAPSYNGSSAPSTTSQPLADLAFPSTGLSGQAPASSLAIDDLLGLDFAVGTAATPSPPSLNLNPKAVLDPGTFQQKWRQLPISISEEYSLSPQGIASLTTPHALLRHMQSHSIHCIASGGQSPNFKFFFFAQKAEASSIYLVECVINTSSAKSQIKVKADDQSSSQAFSTLFQSALSKFGLP 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02771 858 Pfam Adaptin N terminal region 35 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu10g02771 858 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g02771 858 SMART B2_adapt_app_C_2 736 853 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vimu10g02771 858 FunFam Beta-adaptin-like protein 727 856 - -
Vimu10g02771 858 MobiDBLite consensus disorder prediction 673 694 - -
Vimu10g02771 858 FunFam Beta-adaptin-like protein A 14 621 - -
Vimu10g02771 858 Pfam Beta2-adaptin appendage, C-terminal sub-domain 739 852 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vimu10g02771 858 PIRSF Beta_adaptin 11 858 IPR016342 GO:0015031|GO:0030276
Vimu10g02771 858 MobiDBLite consensus disorder prediction 654 694 - -
Vimu10g02771 858 Gene3D - 15 611 IPR011989 -
Vimu10g02771 858 MobiDBLite consensus disorder prediction 655 669 - -
Vimu10g02771 858 SUPERFAMILY ARM repeat 29 597 IPR016024 -
Vimu10g02771 858 Gene3D - 726 856 IPR012295 -
Vimu10g02771 858 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 15 823 IPR026739 GO:0016192
Vimu10g02771 858 MobiDBLite consensus disorder prediction 12 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02771 Vimu-Chr10 39059875 39068849 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02771 - - pvu:PHAVU_009G105700g 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02771 10 39059875 39068849 Vimu10g02771 10 39059875 39068849 ECH