Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02764 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTCTCTCTGATTCTTATACCTCTCCCTGTGATCGCAGACTCAACACTCTTGCCAGACATTTCATTAGCGTTCTTCAACCAATGGCTTCTAACGATGGCATCTCCGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTCAACCACCTCGTTCGTGCGCCTGAAGATCCTATCCTCGGGGTAATATTTTCTTCTCGCGTCGCTATTTATTCAAAATCATCGCAATTACGATCTTGTAACGTATTAGCTGAGATCGCGCCGCACGGCACGTTTCGCCGATGCCGTGTTGCGTTGCCTTTGAAGATAGTGCACGTGACGGTTGCGTATAACAAAGATCCGAGTCCAGTTAAGCTCAACTTGGGCGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGAAGGTTGAGCAGCTACTCATAAATGACTTGTTAGTACCTGACTATACTGTCTCCCTTCTCGTTTCCGGTGATATTATGCGGAACTTTTTAGAATGTTCTGTTCTGCACTATTTTCAGAACAGGGTTACCACTGTACAATGCTTATCTGGGACCGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACCTGGGGCAATCACCACAAGGTTTTCAACTTAGCGGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGGGGGCTTGACTTTGAAGGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCAACTGGTGTTGATCCAACCCTCGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATTGAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGCAAGCCTCTTTTGCGGTTTTGCTAGCGGCAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTGGCACAAAGTTATGCAAAGAATTTGGGTCTTTATGGAGAACGTGTTGGAGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTCGTGATTAGACCCATGTACTCGAATCCTCCCATTCACGGTGCATCCATTGTGGCTGCCATTCTCAAGGACGGAGATTTGTTCAATGAGTGGACTATCGAGTTGAAAGGAATGGCTGATCGAATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGCTCCAGAGGAACACCTGGTGATTGGAGTCACATCATCAAACAAATTGGCATGTTTACTTTCACAGGATTGAATGCTGAACAAGTTTCCTTCATGACTAATGAGTATCATATATACATGACATCTGATGGGAGGATTAGTATGGCCGGTCTAAGTTCCAAAACGGTCCCACATCTGGCTGATGCGATCCATGCAGCTGTAACCGGCGGTGTCTAA 1506 0.4602 MRPPVILKTTSLSDSYTSPCDRRLNTLARHFISVLQPMASNDGISASPTAASDSVFNHLVRAPEDPILGVIFSSRVAIYSKSSQLRSCNVLAEIAPHGTFRRCRVALPLKIVHVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKVEQLLINDLLVPDYTVSLLVSGDIMRNFLECSVLHYFQNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHHKVFNLAGLSVKTYRYYAPATRGLDFEGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRLKALLPFFDSAYQASLFCGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAAILKDGDLFNEWTIELKGMADRIISMRQQLFDALRSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTNEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTGGV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02764 501 PANTHER ASPARTATE AMINOTRANSFERASE 99 498 IPR000796 GO:0006520|GO:0008483
Vimu10g02764 501 CDD AAT_like 193 481 - -
Vimu10g02764 501 Pfam Aminotransferase class I and II 126 493 IPR004839 GO:0009058|GO:0030170
Vimu10g02764 501 PRINTS Aspartate aminotransferase signature 301 313 IPR000796 GO:0006520|GO:0008483
Vimu10g02764 501 PRINTS Aspartate aminotransferase signature 374 399 IPR000796 GO:0006520|GO:0008483
Vimu10g02764 501 PRINTS Aspartate aminotransferase signature 442 460 IPR000796 GO:0006520|GO:0008483
Vimu10g02764 501 PRINTS Aspartate aminotransferase signature 270 289 IPR000796 GO:0006520|GO:0008483
Vimu10g02764 501 SUPERFAMILY PLP-dependent transferases 100 497 IPR015424 -
Vimu10g02764 501 FunFam Aspartate aminotransferase 391 493 - -
Vimu10g02764 501 FunFam Aspartate aminotransferase 179 401 - -
Vimu10g02764 501 Gene3D Aspartate Aminotransferase, domain 1 110 493 IPR015422 GO:0003824
Vimu10g02764 501 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 344 357 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu10g02764 501 Gene3D - 158 401 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02764 Vimu-Chr10 38975790 38980096 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02764 K14454 - gmx:547509 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02764 10 38975790 38980096 Vimu10g02764 10 38975790 38980096 ECH