Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02756 ATGCAGGCATCGAAGGCAAGGCTGTTCAAGGAGTACCATGAGGTGCAGCGAGAAAAGATTGCTGATCCTGATATTCAACTAGTCTGTGATGAATCTAACATTTTTAAATGGACGGCTTTTGTCAAGGGTCCCTCTGAGACTCCTTACGAGGGAGGGGTGTTCCAGCTTTCATTTTCTGTTTCGGATCAGTATCCTCTACAGCCTCCTCAAGTCCGGTTTTTGACAAAGATATTTCATCCAAATGTTCACTTTAAGGTAGGATGGATCTTTATCGGTAAGAGTATGCTGGGGAAGGTGAAGAGGGTAGCAATAACTATAGGAGGGGTGGTAGGGATAATGGGTATTGATGTGGCAACAGTGGTTATCAGTGATGGTAGGAGTGGCGGTAGTTATCAATGGGAATGGGGGATGTTGGTGCTGGAGCAACATGGACAGCGGGCACAGCTGAATGGTGAGCATGAAATGAGGAATTGTAATTTAGAGGTAGAGACTGGGGAGATTTGTCTGGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACCCTTCAATCTGTCTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGCGATGTTAGAGGCTACCAATCCATGGCAAGAATGTACACAAGACTTGCAGCAATGCCAAAGAAAGGCTGA 708 0.4605 MQASKARLFKEYHEVQREKIADPDIQLVCDESNIFKWTAFVKGPSETPYEGGVFQLSFSVSDQYPLQPPQVRFLTKIFHPNVHFKVGWIFIGKSMLGKVKRVAITIGGVVGIMGIDVATVVISDGRSGGSYQWEWGMLVLEQHGQRAQLNGEHEMRNCNLEVETGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02756 235 Gene3D Ubiquitin Conjugating Enzyme 148 230 IPR016135 -
Vimu10g02756 235 Pfam Ubiquitin-conjugating enzyme 152 225 IPR000608 -
Vimu10g02756 235 Pfam Ubiquitin-conjugating enzyme 7 91 IPR000608 -
Vimu10g02756 235 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 231 IPR000608 -
Vimu10g02756 235 Gene3D Ubiquitin Conjugating Enzyme 1 111 IPR016135 -
Vimu10g02756 235 SUPERFAMILY UBC-like 5 86 IPR016135 -
Vimu10g02756 235 SUPERFAMILY UBC-like 155 231 IPR016135 -
Vimu10g02756 235 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 84 - -
Vimu10g02756 235 CDD UBCc 7 226 IPR000608 -
Vimu10g02756 235 SMART ubc_7 6 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02756 Vimu-Chr10 38931066 38933674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02756 7 87 Miscellaneous Gene Families AT3G17000 32.530 2.48e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02756 K10689 - han:110865668 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02756 10 38931066 38933674 Vimu10g02756 10 38931066 38933674 ECH