Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02749 ATGGCATCTATTCGAAGAACTTTGTCGCCTGTTGCTAGGGCTGGAACTGCAACAAATGTTGAAGTCTGTTCAGTAGCTTCTCCGTTGTCTAAGTCATCGTCAAGTCCTCATAACTGGTCACCTTCAGTTGGATTGGACTACCGTGCTTTTGTGTTTGGTGCTTTCTCCCCAAGATCTTTCAGGGGTTTTGAGAGATCAAAACCCAGGGGCCAGCTCTGGAGGAAGGTACTATTCCATTTTTTCATCTGTTTCATGGTTGGTGTTTCTGTTGGACTCATTCCACTTGCATCAGTACACATGTCAATGAATCTCATGCCAAAACATCGAGCCTTCTCATTTGAGGTGATATCTGCAATGGGAAATTTCCAGCAGCTTGAAAATGCAGCGATAAATATAACACCATCAGTCAACGAGGCTGTGAATTTTAATGCTTCTTTGTATGTATCTGCGAAAGAACCAGATCTAATAGATGGCGTGGCATATAATATATCAAATAGCCAAATCCGTGAACATTCACATGTGGAGTCTCAGAAGCTACTCATCATTGTGACTCCAACATACAATCATCTATTTCAAGCATATTACTTGCATCGCTTGTCACAAACATTAAAACTGGTCTCACCTCCCTTGTTGTGGATTGTTGTTGAGATGACTTCCCAATCTGAAGAAACTGCTGACATCTTAAGGAGTAGTGGGATTATGTACAGGCATCTCACTTGTAAAACAAATATAACAAACCCAAGCCATAGGAGCATTCTTCAAAGAAATATTGTAATGGCTCACATCGAAACTCATCGTCTTGATGGAATTGTTTACTTTGCAGATGATGATAACATCTATTCAGTGGAGCTCTTTCAGCGAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTAGCAAGATTATCAGGGGATAGAAGTAGAATTGTCTTGCAAGGGCCCATTTGTAATGGAAATCGAGTAATTGGATGGCATGCGAATGAATCAAATGGGAAATCCAAAAGATTTCATGCTGAAATGTCGGGTTTTGCCTTCAATAGTACGATACTCTGGGATCCAAAGAAGTGGCATCGCCCTACTCTAGAACCTATCAGGCAACTTGACTCGGTCAAGGACAGTTTGAGGGTCAAATGCAGAGACAGATACGGAGCTATTGCTGTAGCCAGTCTCAGGAGTTTATTTGACTCAACATTTGATTCAGGAACTGAAGTCAGCACATTGATTGAGCAGCTGGTTGAAGATGAAAGTCAAATGGAGGGCTTGATGGACAACTGCTCGAGAATTATGGTCTGGCATATCGATCTTGAATCATCTTATCCATGCCATTTTTCAGCTTCCACTTGTGTGAAATCCCGGTGGAGAAGTGGAGAGCAGTAA 1377 0.4176 MASIRRTLSPVARAGTATNVEVCSVASPLSKSSSSPHNWSPSVGLDYRAFVFGAFSPRSFRGFERSKPRGQLWRKVLFHFFICFMVGVSVGLIPLASVHMSMNLMPKHRAFSFEVISAMGNFQQLENAAINITPSVNEAVNFNASLYVSAKEPDLIDGVAYNISNSQIREHSHVESQKLLIIVTPTYNHLFQAYYLHRLSQTLKLVSPPLLWIVVEMTSQSEETADILRSSGIMYRHLTCKTNITNPSHRSILQRNIVMAHIETHRLDGIVYFADDDNIYSVELFQRMREIRRFGTWTVARLSGDRSRIVLQGPICNGNRVIGWHANESNGKSKRFHAEMSGFAFNSTILWDPKKWHRPTLEPIRQLDSVKDSLRVKCRDRYGAIAVASLRSLFDSTFDSGTEVSTLIEQLVEDESQMEGLMDNCSRIMVWHIDLESSYPCHFSASTCVKSRWRSGEQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02749 458 SUPERFAMILY Nucleotide-diphospho-sugar transferases 179 442 IPR029044 -
Vimu10g02749 458 CDD GlcAT-I 178 436 IPR005027 GO:0015018|GO:0016020
Vimu10g02749 458 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 179 447 IPR029044 -
Vimu10g02749 458 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 71 440 IPR005027 GO:0015018|GO:0016020
Vimu10g02749 458 Pfam Glycosyltransferase family 43 199 436 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02749 Vimu-Chr10 38856084 38859640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02749 1 437 Glycosyltransferase AT1G27600 42.466 1.84e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02749 K20869 - gmx:100808765 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02749 10 38856084 38859640 Vimu10g02749 10 38856084 38859640 ECH