Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02748 ATGGAGGAAGCAAAGGGAGTAGTGAAACACTTACTGCTCGCGAAGTTCAAGGACGACGTGACGCCAGAGAAGATTGAAGAGCTCATCAAGGGCTATGCCAACCTAGTCAATCTTATCCCACCCATGAAAGCATTCCATTGGCTATTGAAGAAGCCCGTCGGTGAAATTGCAAGATTTCAGAACAAGGTCTTTGCCTTTTCTGCACTGGGCAAAGATGTAAGTGCTGAAAACCTGCATCAAGGCTTCACTCATGTGTTTGAATCAACCTTTGAGAGTACAGAGGGCGTTGCAGAGTATGTAGCTCATCCTGCTCATGTTGAATTTGCAAATTGGTTCCTTTCCTCTGCAGAGAAAGTGGTTGTGATTGACTATAAGCCTATCAGTTAA 387 0.447 MEEAKGVVKHLLLAKFKDDVTPEKIEELIKGYANLVNLIPPMKAFHWLLKKPVGEIARFQNKVFAFSALGKDVSAENLHQGFTHVFESTFESTEGVAEYVAHPAHVEFANWFLSSAEKVVVIDYKPIS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02748 128 SUPERFAMILY Dimeric alpha+beta barrel 8 125 IPR011008 -
Vimu10g02748 128 SMART Dabb_2 8 126 IPR013097 -
Vimu10g02748 128 Pfam Stress responsive A/B Barrel Domain 69 125 IPR013097 -
Vimu10g02748 128 Pfam Stress responsive A/B Barrel Domain 8 52 IPR013097 -
Vimu10g02748 128 PANTHER - 5 127 IPR044662 -
Vimu10g02748 128 ProSiteProfiles Stress-response A/B barrel domain profile. 8 124 IPR013097 -
Vimu10g02748 128 FunFam Stress-response A/B barrel domain-containing protein HS1 1 128 - -
Vimu10g02748 128 Gene3D - 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02748 Vimu-Chr10 38848836 38850025 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02748 - - gmx:100305974 182.185