Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02741 ATGAAAGCACCTAACTCCTTTTCAATTTCAGTGAGCCCGACAGCGTCTAACTCTAAATGCTCAGTCCATCAACTGGAGAACATAGATGAGAATGCTCCTGCAGATTGGACTGCATCATCCTGTCCCCCACCTGATACTCCAACTGAGTCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCCGCCATGGAACTCTCTAAAGCATTGCACAGCACCAACATTACCAGCATAGATATGCCACTTTCTTGCCCTTCAGGTCACCAATTTGATACCAAGAGTTCCACTGCTTCAAAGGATTTATCTAACTGTTGTTATCCTCCAATTTCACCGAATGACAGTAGCGAAAAGAAGGATTTACTTTTACTCCATCAAGCACTCAGTACAGAATTCCTTTCCAGTCAAAACTTACTCAGAAATGGGCTTTACAGGAGTTTGCTAAGAGGGAGGACAATGGGTAGGTGGTTGAAAGATCAAAAAGAGAGGAAAAAGCAGGAAATAAGGACCCATAACGCTCATTTACATGCTGCGGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCTGCGGTTGCAGCATCAACAGCATCACCTGAAATACCTTATTCCAACCCAAAGACCCCTCCACCCCTGGCTTCTGCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGAGCTGAACATGACCAAATCTTAACAGTAGTCAACTCCGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCTGCTACTCTAAAGGCAAGGCTACAAAAGGGGCCTGGAGCAACTGCTATTCCTCTAGTTGAGGAAAAGTGTAACGAAATCAAAGAAGCAAACATCTTGACAGCACTGGACTATGTTTTTAAAGGAGGAGAACTTCTCAAACGTACAAGAAAAGGAGATCTTCACTGGAAGCAAGTTTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAACATATGGGAGGAACATTCACAAAAAAGAAGAAATATATAGTGACCGGCCTTTGCAATGATATCCCAGCATGGCCTGGAAGGGAGAGAGAAGACACCAATGAAAAAAGGGCATACTTTGGAATAAAAACAACGGACAGGACCATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTGTGGCTTGAGGGTATCCAGTACATGTTGAATTGCCGTGTCAAAGTAACATTATGA 1266 0.4305 MKAPNSFSISVSPTASNSKCSVHQLENIDENAPADWTASSCPPPDTPTESMEFLARSWSLSAMELSKALHSTNITSIDMPLSCPSGHQFDTKSSTASKDLSNCCYPPISPNDSSEKKDLLLLHQALSTEFLSSQNLLRNGLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEIPYSNPKTPPPLASAAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATAIPLVEEKCNEIKEANILTALDYVFKGGELLKRTRKGDLHWKQVSFNINSNLQVVVKMKSKHMGGTFTKKKKYIVTGLCNDIPAWPGREREDTNEKRAYFGIKTTDRTIEFECGSKGDKQLWLEGIQYMLNCRVKVTL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02741 421 Gene3D - 288 419 IPR011993 -
Vimu10g02741 421 Pfam Plant pleckstrin homology-like region 312 415 IPR013666 -
Vimu10g02741 421 ProSiteProfiles PH domain profile. 306 414 IPR001849 -
Vimu10g02741 421 Pfam Auxin canalisation 44 285 IPR008546 -
Vimu10g02741 421 SUPERFAMILY PH domain-like 307 415 - -
Vimu10g02741 421 PANTHER EXPRESSED PROTEIN 35 416 IPR040269 -
Vimu10g02741 421 SMART PH_update 307 416 IPR001849 -
Vimu10g02741 421 CDD PH 309 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02741 Vimu-Chr10 38774824 38780726 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02741 - - gmx:100815080 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02741 10 38774824 38780726 Vimu10g02741 10 38774824 38780726 ECH