Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02738 ATGGATTTTCATGGCAAGGACACCCTCCTCAGCCTAATGGACACCGAAAAGTCAGAACCCCCACAATCCCCTCTTCACCTTCATCTTCAAACCCACAGAGAGATAAGTGAACAAGACCTTCAGTTCAGTTCCCCAAGGCCTTCAAGCTCCGACGGCATGTTCCCTATCATGCCGGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCATCTTCTTTGCTTTACCATTGCATCGCTTCGCTCCACCGCCACGAAGGTAACATCTACGCAATCGCCGCTTCAAAGGGTTTGGTATTCACCGGCTCCAACAGCAGCAGAATCCGAGTCTGGAAGCAGCCAGATTGCATGGACAGAGGGTATCTCAAAGCCAGCTCCGGTGAGGTGAGAGCCATTCTCGCTTATAGCAACATGCTTTTCTCCACGCACAAGGACCACAAGATAAGGATATGGACCTTCACCGTTTCAGATAGCTTCAAGTCCAAGAAACTGGGCACTCTCCCTAGAAAGAGCTCGATCCTCATGTTCCCCTCGAGAGGGAAGAACACGCCCAAGCACAAAGATTCCGTCTCTTGCATGGCCTATTACCACTCCGAGGGCCTCCTTTACACCGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCCGACAGAAAATGCGTCGACTCGTTCGGCGCACACGAGGATAACGTGAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGATCCTCCGACGGGTCGGTGAAGATATGGAGAAGGGTGTACACTGAAGACTCGCACACTCTCACCATGACTCTCAAATTCCAACCCTCCCCGGTCAACGCTCTCGCGTTGAGCTGCTCGTTCAATCACTGCTTCCTCTATTCGGGGTCCTCCGATGGGATGATAAACTTCTGGGAGAAGGAACGGCTGTGCTACAGGTTCAACCATGGAGGGTTCTTACAGGGTCACCGATTTGCGGTTCTTTGTTTAGCTACGGTAGGGAACATGATATTCAGTGGTTCAGAGGACACCACCATTAGGGTATGGAGGAGAGAGGAAGGGAGTTGCTACCATGAGTGTTTGACGGTTTTGGATGGACACAGAGGACCAGTGAGATGCTTGGCTGCATGCCTGGAGATGGAAAAGGTTGTGATGGGGTTCTTGGTGTACAGTGCTAGTTTGGATCAAACATTCAAAGTTTGGAGGATTAAAGTTTTGCCAGATGAAAAAATGTGCATGGACTACAGTGAGCAGTGTGAAGCCCCAAGGGTGAAGATCAGGGACTACGATATGAGCCCCGTTCTGTCGCCTTCTTGGGTGGAGAAGAAGCTTCAAGGTAGCTATTTCCAGTAG 1350 0.5096 MDFHGKDTLLSLMDTEKSEPPQSPLHLHLQTHREISEQDLQFSSPRPSSSDGMFPIMPDSPWTLSPLPTPSSSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKLGTLPRKSSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFGAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSEQCEAPRVKIRDYDMSPVLSPSWVEKKLQGSYFQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02738 449 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vimu10g02738 449 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Vimu10g02738 449 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vimu10g02738 449 CDD WD40 78 401 - -
Vimu10g02738 449 SMART WD40_4 312 349 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 115 152 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 218 257 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 177 215 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 75 112 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 264 305 IPR001680 GO:0005515
Vimu10g02738 449 SMART WD40_4 356 401 IPR001680 GO:0005515
Vimu10g02738 449 SUPERFAMILY WD40 repeat-like 77 400 IPR036322 GO:0005515
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vimu10g02738 449 Gene3D - 62 171 IPR015943 GO:0005515
Vimu10g02738 449 Gene3D - 177 426 IPR015943 GO:0005515
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 358 IPR001680 GO:0005515
Vimu10g02738 449 Pfam WD domain, G-beta repeat 358 400 IPR001680 GO:0005515
Vimu10g02738 449 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Vimu10g02738 449 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Vimu10g02738 449 Pfam WD domain, G-beta repeat 318 348 IPR001680 GO:0005515
Vimu10g02738 449 Pfam WD domain, G-beta repeat 186 214 IPR001680 GO:0005515
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Vimu10g02738 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Vimu10g02738 449 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 44 404 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02738 Vimu-Chr10 38765840 38767189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02738 186 405 Miscellaneous Gene Families AT5G08390 23.789 1.51e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02738 - - gsj:114414206 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02738 10 38765840 38767189 Vimu10g02738 10 38765840 38767189 ECH