Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02700 ATGGATGACGATGAGAGAGAGAGGTTACTGGAGAGGGAGAGATTGCAAATCCAGATGATTCGCCAGCTCGATCTCGAGCACCTTGAAGTTGAAGAAGTCGATTACTCCGATGAAGACGAAGACGCCGACGGCGAGGCCGACTCGGATTATGCGCTTTGGCTTTCACAATTAACTTCGTCCGGTTCTCCTCACTCTTCTGCTGAATTCACTTTTGACACCTATATCACGCCGTTGCATACCTATCTCGGTGATGTCGAAGACACGCGTCACAGGACTGCGTTTTTGGACGGTGGAGCTGTATTGAACATTCCGCTCTTTTGTCTCCGAGGAGTCGTACTCTTTCCCGGGGCTACACTTCCCCTTAGAGTTATTGAACCTCGTTTGGTGGCTGCTGTGGAGAGAGCTCTAACTCAAGACGATGTTCCTCATACCATTGCTGTTATTCGAATCCACAGGGATACTGCAACACGTAGGACGAAATCAGCAAGCGTTGGGACAACTGCAGAGATTCGACAATTTGGGCGTCTGGGGGACGGTTCACTGAATGTAGTTACCCGTGGACAACAACGATTTCGCCTAAGACGGTCCTGGAATGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGATCTTCCAGTGAGAATTCCAAGAGATGCTTTTGGAAAATTAGCACCATTGAGTAACATGCCCTGTAGTCAAGCTGTCTCACATACGGTGTCTTCACCATATTCTCATGCTAAAATGCAAAGGTCAAAAGATAAGGAAAGTGATTCAGAACCAAGTTCAGATGACAGTTTTGAGAATGAACTCTCACCGGTGGAAAGGAAAATCCATCTATCAGTTGTTGGCTCCAGTTATGTAGATGATACAATGAATGAATCAGCAAACAGCTGCAACCCTAAATTCATGTGTAAGTCAGATCAGGAAATTAGATCCAATCTGGATTCAAGGACTGGGAATTGTTCCACTTCTGGAAAGCAGTCATGGAATGAAGAGCTTAATAGATGTAAAAACATATGTGTCTACACATCTCATAAAATTTCAAAAGCATTTTGGCCCCACTGGACATATCGGATGTTTGACTCTTATTTGCTGGCACAAAGGGCTGCAGTTGGGGTGCCTAACATGGAAAGTCTCGTTAAGAAGCCTGATGTTTTATCATTTCACATAGCTAGTAAAATACCTGTGTCTGAGTCTACAAGACAGGAGCTTTTGGATATAGATGGCATTGCATACAGATTGCGTAGGGAAATTGAATTACTAGAGAGCATTGATCTTATCCGGTGTAAAAGCTGTGAGACTACGATTGCAAAACGAAGTGATATGTTGGTGATGTCGAGTGAGGGTCCTCTTAGTGCTTATGTGAATCCAGGTGGTTATGTGCATGAGATAATGACTCTTCACAAGGCAAATGGTTTATCTCTTCTTGGACCAGCAGTAGCTGAATACAGTTGGTTTCCTGGGTAA 1479 0.4429 MDDDERERLLERERLQIQMIRQLDLEHLEVEEVDYSDEDEDADGEADSDYALWLSQLTSSGSPHSSAEFTFDTYITPLHTYLGDVEDTRHRTAFLDGGAVLNIPLFCLRGVVLFPGATLPLRVIEPRLVAAVERALTQDDVPHTIAVIRIHRDTATRRTKSASVGTTAEIRQFGRLGDGSLNVVTRGQQRFRLRRSWNDVEGVPYGEIQIIEEDLPVRIPRDAFGKLAPLSNMPCSQAVSHTVSSPYSHAKMQRSKDKESDSEPSSDDSFENELSPVERKIHLSVVGSSYVDDTMNESANSCNPKFMCKSDQEIRSNLDSRTGNCSTSGKQSWNEELNRCKNICVYTSHKISKAFWPHWTYRMFDSYLLAQRAAVGVPNMESLVKKPDVLSFHIASKIPVSESTRQELLDIDGIAYRLRREIELLESIDLIRCKSCETTIAKRSDMLVMSSEGPLSAYVNPGGYVHEIMTLHKANGLSLLGPAVAEYSWFPG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02700 492 Gene3D - 83 211 IPR046336 -
Vimu10g02700 492 FunFam ATP-dependent protease La domain-containing protein 83 211 - -
Vimu10g02700 492 SUPERFAMILY PUA domain-like 102 426 IPR015947 -
Vimu10g02700 492 MobiDBLite consensus disorder prediction 241 274 - -
Vimu10g02700 492 FunFam Protein cereblon 425 492 - -
Vimu10g02700 492 Pfam ATP-dependent protease La (LON) substrate-binding domain 102 426 IPR003111 -
Vimu10g02700 492 CDD CRBN_C_like 431 492 IPR034750 -
Vimu10g02700 492 Gene3D - 372 423 - -
Vimu10g02700 492 PANTHER ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEIN 62 427 - -
Vimu10g02700 492 FunFam Lon protease homolog 365 423 - -
Vimu10g02700 492 SMART lon_5 102 427 IPR003111 -
Vimu10g02700 492 ProSiteProfiles CULT domain profile. 428 492 IPR034750 -
Vimu10g02700 492 ProSiteProfiles Lon N-terminal domain profile. 103 427 IPR003111 -
Vimu10g02700 492 Gene3D Peptide methionine sulfoxide reductase. 424 492 - -
Vimu10g02700 492 MobiDBLite consensus disorder prediction 251 265 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02700 K11793 - gmx:100779918 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02700 10 38430320 38433876 Vimu10g02700 10 38430320 38433876 ECH