Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02699 ATGAGCGTTTCGCATTTCGCTGTTCTATCGTGTTGTCGTCCACTTTTCGTCCCTTCACTGTCCCGTGCTTCAACGCTCCGTTCTCGCATATGCTGTTGTACTACTCTCACTGCTACCTCCACAGAGACTCCAACTCCAATCACCGTAAAGAAACGAGTAGTGTCGGGGGTTCAGCCCACGGGCGCAATTCACCTTGGAAACTATTTTGGAGCTATCAAGAATTGGGTTGCCCTTCAGAATGTATATGAAACACTTTTCTTCATTGTGGACCTGCACGCGATTACATTACCATACGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTAGATCCTTCCAAGGCCTCAGTATTTGCACAGTCTCATGTTCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCGATTGGTTGGCTGAACAAGATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTGGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCGAGACTTAGCTGAGCGGGTTAATAATTTATATGGAGGGAGAAAGTGGAAGAAATTAGGGGGCCGAGGTGGTAATATATTTAAGGCAAAGCCCCTTATACCTCCAGCTGGTGCCAGGATAATGTCACTTACGGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAACATTCTTGATCCTAAAGATGTAAGTATATATGTTATCATTGTAAATCCTCATCTTGGTCAAGAGTTAATTCTACAACTGTGGAAAAGAGTTGAAAGAACTTTAGAGATTATCCTGTACCATGACTTTGGATGGACAGATTATGGATTCATATTTGGGGCTTCCCTACTAGGTGTGCTTAATTTGCAATCTTTGTTGCCACCTCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTGTTTCAGGAAAGGCGAAAGAGGAAGTTGTTCAGGAATGCCAAAATATGAACTGGGGAACTTTCAAAACCCTCTTGACAGATGCCTTGATTGATCATTTACATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCACAAGGTGCTAGAAATGCAGCAGAAATAGCAGATACCACACTTGATAATGTTTATCAAGCAATGGGGTTTTTGAGGAGACAGTGA 1359 0.4246 MSVSHFAVLSCCRPLFVPSLSRASTLRSRICCCTTLTATSTETPTPITVKKRVVSGVQPTGAIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFAQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGNIFKAKPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDVSIYVIIVNPHLGQELILQLWKRVERTLEIILYHDFGWTDYGFIFGASLLGVLNLQSLLPPLIANKIKRCKTDSFPSLEFDNSERPECNNLLSIYQLVSGKAKEEVVQECQNMNWGTFKTLLTDALIDHLHPIQVRYEEIMSDSGYLDEVLAQGARNAAEIADTTLDNVYQAMGFLRRQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02699 452 CDD TrpRS_core 52 400 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 SUPERFAMILY Nucleotidylyl transferase 51 279 - -
Vimu10g02699 452 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu10g02699 452 Gene3D - 332 416 - -
Vimu10g02699 452 NCBIfam tryptophan--tRNA ligase 50 273 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 PRINTS Tryptophanyl-tRNA synthetase signature 63 79 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 PRINTS Tryptophanyl-tRNA synthetase signature 113 132 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 PRINTS Tryptophanyl-tRNA synthetase signature 254 264 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 PRINTS Tryptophanyl-tRNA synthetase signature 190 211 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vimu10g02699 452 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 24 274 - -
Vimu10g02699 452 Hamap Tryptophan--tRNA ligase [trpS]. 50 449 IPR024109 GO:0004830
Vimu10g02699 452 Pfam tRNA synthetases class I (W and Y) 336 403 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu10g02699 452 Pfam tRNA synthetases class I (W and Y) 51 273 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu10g02699 452 SUPERFAMILY Nucleotidylyl transferase 333 448 - -
Vimu10g02699 452 Gene3D HUPs 40 280 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02699 K01867 - gmx:100780447 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02699 10 38407267 38421756 Vimu10g02699 10 38407267 38421756 ECH