Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02692 ATGCGCGAAAAGTGTTTCTCGAATCTAAAGACTCGGTTTTACCCAGATGCGGTGGTCGCAGAAAACTGGTGGCGCAGTTTTACCGAGATTGATTCAATATGTTGTGCTAGCGGTGCCTCCACGCCGCCTCAACAGGAACAAGCCAACAAGTACGGTTTCACGAAGCCTCTCTCTCTCGCGGGTCCCACCGACGCTGATCTCAACCGTAACAACGAGTTGGAGAGGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGATGAGTCCGCCGCGAGGAAGGAGGTTCTTCACCGCCTCGATCAGATTGTGAAGAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAACGCAGTTATTTTCACTTTTGGTTCTTACCGACTTGGGGTTCATGGACCTGGAGTTGACATTGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCCGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTGGATATCTCTCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTCCGTAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCCCGGTTCTTCAGGGTCTATACACAGTGGCGATGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAATCCCCGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGTTACAATGTCTCAGCAAGTACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATATCTTTTTTGAGGCGTACAAAAACTATTTACAAGTGGACATAGTTGCATCGGACACTGATGATTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTTAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCACATGAGTATATAGACACATCCAAGCCATGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAGGGACAGCAATTTGATATACGTGGAACGGTTGATGAATTTAGACAAGAAATAAATATGTATATCTACTGGAAGCCAGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTTCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCAAGACACATAAACCATCCGACTGAAAAAACAGGTGATGATGCCACAAAGTGCTACTCTGGATCTGGGCCATCTGAAAGATGCACCAAGAGGAAAAGTTACCCTGAAATGATGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAAAGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAGCTCAAATGAGTATTGATAGTATGGAAGGGGTTTGGGTAGCTGGTTCAACAGCCAAGTATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTGCTCCCAGGAAGTGGACTTAGCTCTGTCGTAGCTGACATGCAGATAAGTGAACCAGGCTTTGTTGACACCACAGATGATATGTTGAAACCGAGGAGTGTAGAAGTTCCTAATGAGAATGGAGTTGTCGTTGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTTGGAAAGTGAAGAAACTGAATCGACTAACAATTTTTCAAACTGTAAAGCGGGTGTCGTTGATATGGATCAGCAACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAGTTGCGAGATCAGTTCTGAAGAGAGTGGGTGTTTTCTTGGAAATAGAGTATTTCAAAATATCAGGGCTCAAGAATATAAGGTCCTGCACCACTATACGTGCTATGTTTCCAGTAACTCCAGATTTCAGACTCAGAAGTGTTGTAAAATTGAAGATGGGCTAGGTGGACGAGTTTGGACTGAATCCCATGATGTTTGA 2355 0.4369 MREKCFSNLKTRFYPDAVVAENWWRSFTEIDSICCASGASTPPQQEQANKYGFTKPLSLAGPTDADLNRNNELERFLLDSGLYESNDESAARKEVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYIFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHINHPTEKTGDDATKCYSGSGPSERCTKRKSYPEMMEKKPDKPDKRASISPQRLESVSPESCTSKSGGTAQMSIDSMEGVWVAGSTAKYANSNCEIKSSDVLPGSGLSSVVADMQISEPGFVDTTDDMLKPRSVEVPNENGVVVGDKAQDLALDCLESEETESTNNFSNCKAGVVDMDQQLDKACNFITRDECSDYVPNASSQNLSCEISSEESGCFLGNRVFQNIRAQEYKVLHHYTCYVSSNSRFQTQKCCKIEDGLGGRVWTESHDV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02692 784 MobiDBLite consensus disorder prediction 541 563 - -
Vimu10g02692 784 Gene3D Poly(A) polymerase predicted RNA binding domain 378 493 - -
Vimu10g02692 784 FunFam Poly(A) polymerase alpha, putative 84 240 - -
Vimu10g02692 784 PANTHER POLY A POLYMERASE 38 559 - -
Vimu10g02692 784 CDD NT_PAP_TUTase 91 246 - -
Vimu10g02692 784 SUPERFAMILY PAP/OAS1 substrate-binding domain 251 375 - -
Vimu10g02692 784 SUPERFAMILY Nucleotidyltransferase 49 245 IPR043519 -
Vimu10g02692 784 Pfam Nucleotidyltransferase domain 125 201 IPR002934 GO:0016779
Vimu10g02692 784 Gene3D - 217 375 - -
Vimu10g02692 784 FunFam Nuclear poly(A) polymerase 4 377 493 - -
Vimu10g02692 784 Gene3D Beta Polymerase, domain 2 85 208 IPR043519 -
Vimu10g02692 784 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 378 504 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vimu10g02692 784 Pfam Poly(A) polymerase predicted RNA binding domain 441 510 IPR007010 GO:0003723|GO:0043631
Vimu10g02692 784 Pfam Poly(A) polymerase predicted RNA binding domain 378 435 IPR007010 GO:0003723|GO:0043631
Vimu10g02692 784 Pfam Poly(A) polymerase central domain 52 250 IPR007012 GO:0043631|GO:1990817
Vimu10g02692 784 MobiDBLite consensus disorder prediction 565 584 - -
Vimu10g02692 784 Pfam Poly(A) polymerase central domain 251 374 IPR007012 GO:0043631|GO:1990817
Vimu10g02692 784 FunFam Putative poly(A) polymerase gamma 248 373 - -
Vimu10g02692 784 MobiDBLite consensus disorder prediction 512 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02692 Vimu-Chr10 38359865 38371078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02692 K14376 - gmx:100802620 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02692 10 38359865 38371078 Vimu10g02692 10 38359865 38371078 ECH