Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02678 ATGGCGTCTTCTAAGAGGCCAAATGTAGAGCCCAACGGGAAAGGGAAACGCCAAAAATCTTCCGGTGGTTTTTCGTCGTTGGATGTTTCTCCAGGGAGTGCGGTGTTCCGTTTGCTCTGTCCCGTATCAAGAATTGGCAGTGTTATTGGAAAAGGTGGTGCTATCATTTCACAAATTCGCCAAGAAAGTGGTGTGAAGGTTAAGATTGAGGAAGCTATACCTGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGATAAAGAAGCTGAAGAAGTTCATGCAGAGCAGGCAAGGGAGGTTAACAATGATGATGCTGGAATCGAGGGGAAAGGGGACGAAGAGGGGAGGGATGGTGGTGATGGGGATGATAATGAAGAAAAAGAAGATAAAAGTTCGGTTCTCGTTCAAGATTCTCCCAGTGAAAAGGGGAATTCCGCCATTCGGAAGGCAATATCATTAGTTTTTGAGAGAATGGTTGAGGGAGTAGAGGAGATGAGTGAAGGGGATGAAGAAAGTAATAAATCTTCTACCCTTGTTTTTAGGTTACTTATTCTTACTACTCAAGTTGGATGCCTTCTGGGAAAGGGTGGTAGTGTGATTAAGAGAATGGCAGCTGAAAGTGGTGCACATATTCGAATCCTTCCTAAAGACAAACTTCCAGCGTGTGCATCAGGTTCTGATGAGATAGTTCAGATCTCAGGAGGAGTAGATGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCATCAACTATTGGAAAATCCACCACGAGATCATGAATTGTCCACTAATTTTAACGGGTCTTCTCATTCATCTGGACAATTTGCACCTCACAGCCGTTCTTTTGGTGGTCAACCTTTTGGTGCTGCCCACGATATTTCTATTTTTCATTCTGCCCCTCCATTGATGTCCAAGTTTCATGAAGCTGCCATTCACGGTCGCACGAGACCTATGCAGGAAATGCTTACTTTTCGTTTATTGTGTCCCGTGGAAAGGGCAGGAAATGTAATTGGTAAAGGTGGAACAATCATAAAGACACTTCAGCAAGAGACAGTAAGTGAAATCAAGATTGTAGAAAGTCCTCCAGATTCAGAGGATTGTGTTATTGTTATATCTGGTCCAGCGCACCCAGATGATAGAGTATCCCCTGTGCAAGAAGCTGTATTTCGAGTGCAAACTAGAATAGCCAAGCCTATGCCTGATGCCAAAGAACATACAATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTAATTCAGGTAAACGGAGAAATTGAGGCAGTGCATGATGCTCTTATGCAAATAACTACTAGATTAAAGCATCATTTCTTCCGTGATTCACATCCATCTGTCAATTATCCTTCAAATTCTCCATTTGTCGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGACGGGGACTGTCACCTCCTGGGATGTATTCTGACCTTGGTCCTCCACCTTATGCGGGTTTTCCTCTTGATGACCGTCCTCCATTTTTGAATAACATACACAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTCAGGCCAAATTAGCTGGTCTGTATCTCCCAAATGGAACCTGCAGAAGTAATGACATTCCACTCTTTAGCTTGGATTTTGGGGTACTTGAAGGTGGCTCACGCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGTAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCACTGGTGCCTGTAATATATGGGGAAGACGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATAACTGATCCAAAACCCGGAGCTGTGGAAACTAAAATTATAATATCCGGAACCCCTGAGCAAACTCATGCAGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTAGTTGA 2094 0.436 MASSKRPNVEPNGKGKRQKSSGGFSSLDVSPGSAVFRLLCPVSRIGSVIGKGGAIISQIRQESGVKVKIEEAIPGCDERVITISGSDKEAEEVHAEQAREVNNDDAGIEGKGDEEGRDGGDGDDNEEKEDKSSVLVQDSPSEKGNSAIRKAISLVFERMVEGVEEMSEGDEESNKSSTLVFRLLILTTQVGCLLGKGGSVIKRMAAESGAHIRILPKDKLPACASGSDEIVQISGGVDVVRKALQSVSHQLLENPPRDHELSTNFNGSSHSSGQFAPHSRSFGGQPFGAAHDISIFHSAPPLMSKFHEAAIHGRTRPMQEMLTFRLLCPVERAGNVIGKGGTIIKTLQQETVSEIKIVESPPDSEDCVIVISGPAHPDDRVSPVQEAVFRVQTRIAKPMPDAKEHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALMQITTRLKHHFFRDSHPSVNYPSNSPFVDQLPPFPPYLGRRGLSPPGMYSDLGPPPYAGFPLDDRPPFLNNIHRPGIPPHISERKPWGPQAKLAGLYLPNGTCRSNDIPLFSLDFGVLEGGSRIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02678 697 CDD KH-I_PEPPER_rpt1_like 35 97 - -
Vimu10g02678 697 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 622 691 IPR036612 GO:0003723
Vimu10g02678 697 MobiDBLite consensus disorder prediction 85 136 - -
Vimu10g02678 697 Gene3D K Homology domain, type 1 320 398 IPR036612 GO:0003723
Vimu10g02678 697 MobiDBLite consensus disorder prediction 14 28 - -
Vimu10g02678 697 MobiDBLite consensus disorder prediction 85 145 - -
Vimu10g02678 697 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 321 405 IPR036612 GO:0003723
Vimu10g02678 697 CDD KH-I_PEPPER_rpt1_like 322 389 - -
Vimu10g02678 697 SMART kh_6 177 252 IPR004087 GO:0003676
Vimu10g02678 697 SMART kh_6 320 396 IPR004087 GO:0003676
Vimu10g02678 697 SMART kh_6 405 480 IPR004087 GO:0003676
Vimu10g02678 697 SMART kh_6 32 102 IPR004087 GO:0003676
Vimu10g02678 697 SMART kh_6 621 691 IPR004087 GO:0003676
Vimu10g02678 697 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 402 484 IPR036612 GO:0003723
Vimu10g02678 697 CDD KH-I_PEPPER_rpt2_like 408 479 - -
Vimu10g02678 697 Gene3D K Homology domain, type 1 621 695 IPR036612 GO:0003723
Vimu10g02678 697 MobiDBLite consensus disorder prediction 251 278 - -
Vimu10g02678 697 CDD KH-I_PEPPER_rpt2_like 180 248 - -
Vimu10g02678 697 Gene3D K Homology domain, type 1 33 104 IPR036612 GO:0003723
Vimu10g02678 697 Gene3D K Homology domain, type 1 404 482 IPR036612 GO:0003723
Vimu10g02678 697 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 258 IPR036612 GO:0003723
Vimu10g02678 697 ProSiteProfiles Type-1 KH domain profile. 321 388 - -
Vimu10g02678 697 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 30 90 IPR036612 GO:0003723
Vimu10g02678 697 ProSiteProfiles Type-1 KH domain profile. 406 475 - -
Vimu10g02678 697 Pfam KH domain 624 687 IPR004088 GO:0003723
Vimu10g02678 697 Pfam KH domain 182 247 IPR004088 GO:0003723
Vimu10g02678 697 Pfam KH domain 410 475 IPR004088 GO:0003723
Vimu10g02678 697 Pfam KH domain 323 375 IPR004088 GO:0003723
Vimu10g02678 697 Pfam KH domain 36 92 IPR004088 GO:0003723
Vimu10g02678 697 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Vimu10g02678 697 Gene3D - 120 256 - -
Vimu10g02678 697 ProSiteProfiles Type-1 KH domain profile. 622 686 - -
Vimu10g02678 697 ProSiteProfiles Type-1 KH domain profile. 33 102 - -
Vimu10g02678 697 MobiDBLite consensus disorder prediction 1 30 - -
Vimu10g02678 697 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 316 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02678 Vimu-Chr10 38246623 38250724 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02678 K21444 - gmx:100777433 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02678 10 38246623 38250724 Vimu10g02678 10 38246623 38250724 ECH