Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02676 ATGGATCCCGATCAGTTTCAGAAAAACAGCATGTACGTAGAAACCCCAGAAGCTTTTGGTGAAGGTGGCAAAGACTTCGACGATGATGGACGTGTCAAGAGAACTGGAACATGGATAACTGCGAGTGCTCATATCATAACCGCAGTGATAGGATCTGGAGTGTTGTCACTTGCATGGGCGATTGCACAATTGGGTTGGGTGGCTGGCCCTGCGGTTCTCCTCGCCTTCTCTTTCATCACATACTTCACATCAACTCTTCTTGCAGACTGTTATCGTACACCTGACCCTGTTCATGGCAAGAGAAACTACACCTATTCTGACGTTGTCAAATCCATCTCCGATCCCAGTAACTTTACTGATTTACTTGATTTATTCACATCTGAACTCACAACTTTGAATGAACAAAGAAAACTGGTCATTAAATGCAAGTGGGAGAAAATTCCAACTGTGTGGATTAGCTCAGTACATAAATCTGGTCGGTGTAACTATCGGATACACAATAACAGCTTCAATAAGTATGGTATACCGAATTTCAGCAAGCTCTGGTGGCTATCTATTGTTGCAGCAGTCATGTCTTTTGCTTATTCTTCCATTGGACTCGGCCTATCTGTTGCCAAAGTTGCTGGTGGCGGAGGTCATGTACGGACAACCTTAACTGGGGTGCAAGTTGGTGTGGATGTTACAGGACCAGAGAAGGTGTGGAGGACCTTTCAAGCTATTGGTGACATTGCCTTTGCTTACGCTTATTCTAATGTTCTCATTGAGATACAGGATACCCTGAAATCGAGTCCTCCGGAGAACAAGGTCATGAAAAGATCAAGCTTGATTGGCATCATGACAACAACCTTGTTTTATGTACTATGTGGCTGCTTAGGTTATGCAGCATTTGGAAACGAAGCACCAGGAAATTTCCTCACCGGGTTCGGCTTCTACGAGCCCTTTTGGCTCATAGACTTTGCTAACATCTGCATAGCCGTGCACTTGGTTGGAGCATATCAGGTTTTCTGTCAGCCAATATTTGGGTTCGTAGAGAACTGGAGTAAGGAAAGGTGGCCCAGCAGCCAATTTGTTAATGGGGAGCATACAGTGAAGTTGCCATTGTGTGGAAGCTACAGTGTGAACTTTTTCAGGGTGGTTTGGAGAACGACATATGTTATCACCACTGCTGTCTTAGCTATGCTGTTTCCATTCTTCAATGACTTCCTAGGACTGATTGGTTCGGTGTCCTTCTGGCCATTGACCGTTTACTTCCCTATAGAGATGTACATTAAGCAGTCAAAGATGCAAAAGTTTTCCTTCACATGGACATGGCTCAAGATATTGAGCTGGCTTTGCTTGATTGTTTCCATTATTTCAGCTGTTGGCTCCATTCAAGGCCTCACTCAAGATTTCAAGAAATATCAGCCCTTTAAAGCCCAGCAATAG 1425 0.4421 MDPDQFQKNSMYVETPEAFGEGGKDFDDDGRVKRTGTWITASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLLAFSFITYFTSTLLADCYRTPDPVHGKRNYTYSDVVKSISDPSNFTDLLDLFTSELTTLNEQRKLVIKCKWEKIPTVWISSVHKSGRCNYRIHNNSFNKYGIPNFSKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGGHVRTTLTGVQVGVDVTGPEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVMKRSSLIGIMTTTLFYVLCGCLGYAAFGNEAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFGFVENWSKERWPSSQFVNGEHTVKLPLCGSYSVNFFRVVWRTTYVITTAVLAMLFPFFNDFLGLIGSVSFWPLTVYFPIEMYIKQSKMQKFSFTWTWLKILSWLCLIVSIISAVGSIQGLTQDFKKYQPFKAQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02676 474 Pfam Transmembrane amino acid transporter protein 175 460 IPR013057 -
Vimu10g02676 474 Pfam Transmembrane amino acid transporter protein 34 112 IPR013057 -
Vimu10g02676 474 PANTHER OS05G0424000 PROTEIN-RELATED 37 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02676 Vimu-Chr10 38234756 38238400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02676 7 472 Organic Solute Cotransporters AT5G49630 64.682 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02676 K24917 - gmx:100806335 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02676 10 38234756 38238400 Vimu10g02676 10 38234756 38238400 ECH