Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02664 ATGTGTAATCCCAAACCATCCTCATCATCCCCATTTCTGTGTCCCACAAAAGCCCACATCATAACTCCCGATCCCAAACTCAAAAATCACCCTCCGCTTCATCGTCAACTTCAGGATGAACTTCACAGATGGCCAACTCCCAACGAGGTGATAGCAGAAATGAAGGCACTGGGGAAGATATCAGTCCCAACAGCACTGACCGGGTTGCTCTTATATTCAAGAGCCATGATCTCAATGCTGTTCTTAGGGTACCTTGGTGAGATGGAGCTAGCCGGAGGCTCTCTGTCTATCGGCTTCGCCAACATCACCGGCTACTCCGTCATCTCAGGTCTTGCCATGGGAATGGAACCCATTTGCGGCCAAGCCTACGGCGCAAAACAATGGAAAACGCTGGGCTTGACCCTCCAGAGAACCGTCCTCCTCCTCCTCTCCACCTCCATCCCCATCTCCCTCACCTGGCTCAACATGAAGTCCATACTCTTATGGTGCGGCCAGGACCACCAGATATCCTCCACCGCACAAACCTTCATCCTCTTCTCCATCCCAGACCTCTTTCTCCTCTCCCTCCTCCACCCTCTCCGCATCTACCTCCGTACCCAAAGCATCACATTGCCCCTAACCTACTGCTCCGCCCTCTCACTCCTCCTCCACCTCCCCCTCAACTTCCTCCTAGTCGTTCACTTCAAAATGGGAGTCTCCGGCGTCGCCATAGCCATGGTATGGACCAACCTCAACCTCTTCCTCTTCCTCTCCTCCTTCGTCTACTTCTCCGGCGTCTACAAAGACTCATGGGTCCCACCCAGCTCCGACTGCCTCCGTGGCTGGTCCTCTCTACTTGCACTTGCGGTTCCCACCTGCGTCTCTGTCTGCCTCGAGTGGTGGTGGTACGAACTCATGATAATCCTCTGCGGCCTTCTCCTCAACCCCAAAGCCACCATTGCTTCCATGGGCATCCTCATCCAAACCACCTCCCTCGTCTACGTCTTCCCCTCCTCCCTCAGCCTTGGCGTCTCCACCCGCGTCGGTAACGAGCTCGGCGCCAACCGCCCCGCCAGGGCCCGCATTTCCATGATAGTCTCACTCGCCTGTGCCATCGGTCTCGGCCTCGCCGCCATTGCATTCACCACCCTCATGCGACATCAATGGGGCAGATTCTTCACTTCTGACACCGAAATTCTTGACCTCACCGCCTCCGTGCTCCCCATCGTCGGCCTCTGCGAGCTCGGCAACTGCCCGCAGACCACTGGCTGCGGCGTCCTCCGCGGCAGCGCCAGGCCCACCGTCGGAGCCAACATCAACTTGGCCTCGTTTTATTTGGTGGGCATGCCCGTCGCTGTTCTCCTCGGGTTCGTCGTGAAAATGGGTTTTCCTGGGCTCTGGCTTGGGTTGCTTGCGGCTCAAGCCTCTTGCGCTTCTCTCATGATATTCGTTCTCTGCACCACTGACTGGAATGCTCAAGTGCAAAGAGCCAATGACCTTACCACTGCTAATTCTACTTCTCCCAAGTTACCCACCACTCTCACGCCAACAACCTCAAACCATGTTTCTCTTCCAGAGCCTCTTGTCACCCATGATCACCTTCCCCACACACCCTCTCTTGAAACAGACCCTCTCATTATACACACCGTAAATTAA 1635 0.556 MCNPKPSSSSPFLCPTKAHIITPDPKLKNHPPLHRQLQDELHRWPTPNEVIAEMKALGKISVPTALTGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKTLGLTLQRTVLLLLSTSIPISLTWLNMKSILLWCGQDHQISSTAQTFILFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSALSLLLHLPLNFLLVVHFKMGVSGVAIAMVWTNLNLFLFLSSFVYFSGVYKDSWVPPSSDCLRGWSSLLALAVPTCVSVCLEWWWYELMIILCGLLLNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPARARISMIVSLACAIGLGLAAIAFTTLMRHQWGRFFTSDTEILDLTASVLPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLASFYLVGMPVAVLLGFVVKMGFPGLWLGLLAAQASCASLMIFVLCTTDWNAQVQRANDLTTANSTSPKLPTTLTPTTSNHVSLPEPLVTHDHLPHTPSLETDPLIIHTVN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02664 544 CDD MATE_eukaryotic 53 489 IPR045069 GO:0042910|GO:1990961
Vimu10g02664 544 PANTHER MULTIDRUG RESISTANCE PROTEIN 49 483 - -
Vimu10g02664 544 Pfam MatE 63 223 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g02664 544 Pfam MatE 284 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g02664 544 NCBIfam MATE family efflux transporter 64 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02664 Vimu-Chr10 38053748 38055605 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02664 K03327 - gmx:100788339 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02664 10 38053748 38055605 Vimu10g02664 10 38053748 38055605 ECH