Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02662 ATGGCTTCGTTTCGGCGGACACTGTCGCCGGCGTATCCTGATCGCCAGTACCTAAACGGTTCCTTTCCGGTTTCCTCTCCAACGCATAAGCTCGCTTCCGGGAACGCCAAGTACTCGTCGCCGTTACCGGCTCTTGCGGCGGCGTTTCGGCGACTCGTCGGCGGTGTGTTCACGCGCCGGCACGGTCGGAAAGGGCAGTGGAGACGGGCGGCGTTCAGGTGCGTTCTGTGTTTCTTCGTAGGGTTCTTGCTAGGCATGTTTCCGTTCGGCCACATGGCGGAGGACATTCGGTCGCACGAAATCTCGTTCGAGATGAAGCCTCCGCTGCCGCACGCGAACAACGCGCAGCAGCTCCTCCAGGAAGATCGCGTTCTACGGAATCGCGTCGATGAGGGTTTCGTGATCGATCCGGTGAGCCTAAGCGCGGAGAGGGAGAGGCAGGGTGATAGGTTTGATCTTGTGCCGAGGAAGCCGCTGATTGTGGTGACGCCGACGTATGGCCGAGCTTTTCAGGCGTATTTCCTGAACCGGTTGGGGCAGGTGTTGCGGCTGGTGCCGCCGCCGGTGGTGTGGATTGTGGTGGAGATGAAGGCGGCGTCGATGGAGACGGCAGAGATACTGAGGAAGACGGGAGTGATGTATAGGCATTTGGTGTGCAATAAGAATTTGACGGATGTGAAGGACAGGGGGGTTCATCAGAGGAACACAGCGTTGGAACACATTGAGCGTCATAAGCTCGATGGGATTGTTTACTTTGCGGACGATGATAATGTGTATTCTCTTGAGTTGTTTGACTCCTTGAGAGACATCAGTATGAATCAGAGTTTTTACCACTTGTTTGTTAGTTGCCTCAAGTTACTTACCACTGGCTCTAAGCGGTTGGCACGCCTGCTTTTTGGTAGCATTTGGCTTTTAGTTTTGGGGAGTGGAAGTTCCATTCCAAGCCGCTTTGGCACTTGGCCTGTTGCCATGCTTGCGCCAAGCAAGAACAAGGCCATTTTGGAGGGTCCTGTATGCAATGCAAGCCAAGTGATTGGATGGCATACAAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGAGGCGCCCTTCTTTAAATCCCATTAGACAGTTAGACACAGTGAAGGAAGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGCTCACCTCATGGTTGTTCCAAAATAATGAATTGGCATCTTCATTTGAGTGTTCATAATACAGTTTACCCAAAAGGTTGGGTGCTTCAGAAAAACCTAGATGCTATCATACCTGTCAAGTAA 1365 0.5099 MASFRRTLSPAYPDRQYLNGSFPVSSPTHKLASGNAKYSSPLPALAAAFRRLVGGVFTRRHGRKGQWRRAAFRCVLCFFVGFLLGMFPFGHMAEDIRSHEISFEMKPPLPHANNAQQLLQEDRVLRNRVDEGFVIDPVSLSAERERQGDRFDLVPRKPLIVVTPTYGRAFQAYFLNRLGQVLRLVPPPVVWIVVEMKAASMETAEILRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIERHKLDGIVYFADDDNVYSLELFDSLRDISMNQSFYHLFVSCLKLLTTGSKRLARLLFGSIWLLVLGSGSSIPSRFGTWPVAMLAPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPSLNPIRQLDTVKEGFQETTFIEQLVEDESQMEGSPHGCSKIMNWHLHLSVHNTVYPKGWVLQKNLDAIIPVK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02662 454 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 312 446 IPR029044 -
Vimu10g02662 454 CDD GlcAT-I 157 431 IPR005027 GO:0015018|GO:0016020
Vimu10g02662 454 SUPERFAMILY Nucleotide-diphospho-sugar transferases 316 447 IPR029044 -
Vimu10g02662 454 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 66 271 IPR005027 GO:0015018|GO:0016020
Vimu10g02662 454 Pfam Glycosyltransferase family 43 316 430 IPR005027 GO:0015018|GO:0016020
Vimu10g02662 454 Pfam Glycosyltransferase family 43 178 271 IPR005027 GO:0015018|GO:0016020
Vimu10g02662 454 SUPERFAMILY Nucleotide-diphospho-sugar transferases 158 271 IPR029044 -
Vimu10g02662 454 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 157 286 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02662 Vimu-Chr10 38030753 38035326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02662 1 454 Glycosyltransferase AT1G27600 56.167 3.14e-172 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02662 K20869 - gmx:100809892 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02662 10 38030753 38035326 Vimu10g02662 10 38030753 38035326 ECH