Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02656 ATGTTCCAAACAAGTTCTGTCCCTGTTTCAGAGCTAAGCCAGCACCGATTTTTACTTTACAACAATGATGCCACACAACATCTTTTTGAAGTAGCAGCAGGTCTTGATTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCCCAAGTAAAGCAAGTTGTCAAGGTTGGACAGGGAGTTAACGGCTTTGGGAGAAACATCAGTGGGCTATTCAAGCATGCGATTACTGTTGGTAAAAGGGTTAGAACTGAGACTAACATTGCTTCCGGGGCAGTTTCTGTGAGCTCAGCTGCTGTGGAGTTGGCTTTTATGAAGCTACCTGAAGCCTCGCTTGATAATGCCAGAATGTTGGTTATTGGAGCTGGGAAGATGGGGAAGCTCGTGATCAAACATTTGGTGGCAAAAGGTTGCAAAAAGATGGTTGTTGTCAACAGAACCGAGGAGAGAGTTGCTGCAATACGAGAAGAACTGAAGGATATTGAAATAATCTACAAACCCCTTTCTGAAATGCTCACCTGTGCCGGTGAAGCTGATGTAGTTTTCACCAGTACTGCATCAGAAACCCCATTATTCTTGAAAAGTAATGTCAAAGATCTTCCTCCTGCAAGTCAAGATGTTGGAGGCCGTCGCCTTTTCGTTGACATTTCTGTTCCCCGGAATGTGGGTTCATGTGTCTCAGACCTTGAGTATGTGCGAGTTTACAACGTTGATGACCTTAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGCCTAAGAAAAGCAATGGAAGCACAGACAATCATTGCTGAAGAATCTAAGCAATTCGAAGCTTGGAGGGACTCGCTGGAAACTGTCCCTACTATAAAAAAATTGAGGGCTTATGCAGAAAGAATCAGGCTTGCTGAGCTGGAGAAATGCTTAGGTAAGATGGGTGATGATATACCAAAAAAAACACGGAAGGCTGTGGATGATCTAAGTCGGGGTATAGTGAATAAGTTGCTTCATGGTCCAATGCAACATTTAAGGTGCGATGGGAATGACAGTCGGACTCTTAGTGAGACACTCGAGAACATGCATGCTTTGAATAGGATGTTCAACCTTGATACCGAGATATCTGTTTTGGAGCAGAAGATTCGAGCGAAGGTAGAACAAAACCAGAAATGA 1140 0.4377 MFQTSSVPVSELSQHRFLLYNNDATQHLFEVAAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAFMKLPEASLDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEADVVFTSTASETPLFLKSNVKDLPPASQDVGGRRLFVDISVPRNVGSCVSDLEYVRVYNVDDLKEVVAANKEDRLRKAMEAQTIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDIPKKTRKAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMHALNRMFNLDTEISVLEQKIRAKVEQNQK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02656 379 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 376 - -
Vimu10g02656 379 FunFam Glutamyl-tRNA reductase 89 248 - -
Vimu10g02656 379 Gene3D - 90 242 - -
Vimu10g02656 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 249 IPR036291 -
Vimu10g02656 379 PIRSF GluTR 1 375 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 7 86 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 Hamap Glutamyl-tRNA reductase [hemA]. 1 357 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 Pfam Shikimate / quinate 5-dehydrogenase 100 241 IPR006151 -
Vimu10g02656 379 Gene3D - 1 89 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 255 359 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 9 84 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 ProSitePatterns Glutamyl-tRNA reductase signature. 27 50 IPR018214 GO:0008883
Vimu10g02656 379 NCBIfam glutamyl-tRNA reductase 3 340 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vimu10g02656 379 Coils Coil 142 162 - -
Vimu10g02656 379 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 253 359 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02656 Vimu-Chr10 37966851 37968654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02656 K02492 - gmx:100782247 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02656 10 37966851 37968654 Vimu10g02656 10 37966851 37968654 ECH