Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02651 ATGTTGCATGGGGGAATTATTCGTCCAAGTGTAAGCCCTTATTCTAGTCCAATCATCTTAGTTAAGAAGAAGGCTGGAGGATGGCGTTTTTGTGTGGATTACAGGGCTCTAAATAAGGTCACCATTCCTAATAAATTTCCTATTCCGGTTATTGAAGAATTGTTGGATGAATTGGCTGGCGCTACCATGTTTTCCAAACTGGATTTAAAATCAGGTTATCACCAAATTCGGATGCGACCCCAAGATATTGAGAAAACAGCGTTTCGCACTCATGAAGGCCACTATGAATTTTTGGTGATGCCTTTTGGTCCGACCAATGCTCCTGCTACCTTCCAGGCCTTAATGAATAACATTCTCCAGCCCTTTTTAAGGAATTCCACATTAGATGCCCATGTTCAACATTTGGCCAAAGTTTTAACTATTTTGCATCAAAATGCATTACAACTCAACCAGAAGAAATGTGTTTTTGGGCAGCACCAGTTAGAATATTTGGGTCACATAATATCTCAACAGGGTGTGGCAGCAGATCCTAAGAAGGTTGAGGCAATGCATAACTGGCCTTTACCTAAGACTCCCAAGGCATTACGTGGCTTTTTGGGCCTTACGGGATATTATAGACGTTTTGTTCAAGGGTATGGAAAAATTGCTCAGCCTTTGACACAATTATTATCCAAGGATGGGTTTCATTGGACGGAGGAGGCTAGGACGGCTTTTGAGGAGTTGAAGAAGGTCATTGCCCAATTACCTGTTTTAGCGGTTCCAGATTTTTCCAAATCTTTTACTCTTGAGACAGATGCTTCTGGGAAAGGTTTGGGTGCTGTCTTACTACAAGCAGGGCGGCCTTTGGCTTTTTGGAGTCAAGCTTTATCATCTCGGGCTCAAAATAAGTCTGTTTATGAGCGGGAACTCATGGCTTTGGTGCAGGCTGTTCGGAAATGGAAACATTATCTCATGGGAAGTCATTTTATCATTCTCACAGATCAAAGAAGTCTGAAGTTTCTCACAGATCAGAGATTATTGACTGAAGAACAGTTCAAATGGGCCTCCAAACTAATTGGTTTTGACTTTGAGATTCGTTTCCGCCCTGGTAAAGACAATATTGTGGCTGACGCTCTCTCCCGCAAGTCTTATTTTATGCCTATTTCGGTTTTACAACCCACCCAATGGGACTCTTGGGAGGAGGAATCCCAAACAGATGCAGGTATGGTTTCTTTGATACAAGATTTGATGATCGATCCTAAATCTCATGTGGGATATGAATTACGCAAGGGACGTTTATTTTATAAAGGCAAATTGGTGCTACCTAGAGGGTCTTCCAGCATACCTACCATTTTTAAGGACATGCATGAGTCCCCAACCGGTGGTCATAGTGGCTATTTCTGCACTTTTAAACGCATTGCTGGGTTTGTCAAAGGAATAAGGCTGAAACTTTGGCTCCAGCAGGCTTATTATAGCCTCTACCCATTCCCACTTAAGTCTGTTCAAGGGAAAGACACAATTTTCGTAGTGGTGGATAGACTCACGAAATATGCTCACTTTTTGGCACTTGCTCACCCCTTTACAGCAACAGAAGTGGCACAATTGTTCATTAAAGAAATAGCTGGTACAAAACTCAGGTTCAGCACTGCATATCATCCCCAATCCGATGGTCAAACAGAAGTGGTTAATCGCTGCCTCGAGACTTATTTACGTTGCATGACTGGTACACATCCTAGGAAGTGGCCTCAGTGGTTATCTTGGGCAGAATTCTGGTTTAATACTAACTACAGTATTTCTACTAAGATGTCCCCCTTTAAGGCCCTTTATGGTCGTGATCCCCCTTTGCTGCTCAAAGGTTCTACTATTCCATCAAAAGTGCAAAGTGTGAATCAATTACAACAAGAACGGGATGAGATCTTGAGGGAGTTGAAGGAAAATTATGCAAAGCCCAAGACCAGAATAAGGGCGGTAGAGTTCCAAGTGGGTGATTGGGTGTATCTTAAGTTGCAACCATATCGGCTAAAATCACTGGCTACTAGACCTAATGAGAAGCTTCGCCCCAGATTTTACGGTCCTTATCTAGTTCAAGAACGCATAGGACCTGTAGCTTATAAGCTGGACCTCCCTGCCCACAGCAGAATTCACTCAGTTTTTCATGTCTCCCTCCTCAAGTGCGCTGTTCAGCCAACCACCCCCGTTCAACCTCTTCCTTCTGCACTTACAGAAGATTTGATGTTAGAGGTCTATCCAGAGGAGCTGCTTGATGTGCGCACATCTTCAAGAGGGGATTTGGAGGTTTTACTCAAATGGCAACATCTCCCATCTATTGAAAACAGTTGGGAATCAGCCACAACCATCAATACAGAGTTTCCTGCTTTTCACCTTGAGGACAAGGTGAAACTTCATGGAGGGGTTATTGATAGGTTCAAGGGGAAGGTTAGACATGCCCAAGGATTTCACAATGTAGAAGGTGAGAAGAACATTGAAGCGTACAAGTCTTATGATCTTTTTGATGCAAGCCTGACCCCTCTCGGCTGGAAACAGGTTGAAAATCTGAGAGGACATGTTAAGGCTAGTGGTCTTTCAAAAACAATTGAACTAGTTATAGTTTCTCCCTTGTTAAGGACCATGCAAACAGCAGTGGGAGTTTTTGGTGGTGAAGCATGTACCGATGAGACTAGTGTACCTCCACTAATGAATGCCGGTGTGGGAGACAGTGATCGGCAAGCAATTTCCAGTCTCAATGCTCCACCATTTATAGCAGTGGAGCTTTGCCGGGAACACTTGGGGGTGCATCCTTGTGATAAGAGAAGAAGCATCACTGACTACCGACATATGTTTCCAGCTATTGATTTTTCATTGATAGAAAATGATGAAGACATTCTGTGGAAACCTGACATTAGAGAGAAGAATGAAGAAGTTGCTGCCAGGGGACTTAAATTTTTGGAATGGCTGTGGACAAGAAAAGAAAAGGAGATAGCTGTTGTTACCCACAGCGGTTTTCTGTTCCATTCCTTGAGTGCTTTTGGAAATGATTGTCATCCAACAGTGAAGAGTGAAATCTGCACACACTTTGCTAATTGTGAGCTACGTTCAATGGTTGTCGTTGATAAAGGTATGATTGGTTCAGATGAATCATCTACCAACTATTCTGGCAAAATTCCATATGGCCTTGATCTTCCCAGCGATGTTGCTGACGAAAACCATATAGGGAACGGTAACTGA 3204 0.4301 MLHGGIIRPSVSPYSSPIILVKKKAGGWRFCVDYRALNKVTIPNKFPIPVIEELLDELAGATMFSKLDLKSGYHQIRMRPQDIEKTAFRTHEGHYEFLVMPFGPTNAPATFQALMNNILQPFLRNSTLDAHVQHLAKVLTILHQNALQLNQKKCVFGQHQLEYLGHIISQQGVAADPKKVEAMHNWPLPKTPKALRGFLGLTGYYRRFVQGYGKIAQPLTQLLSKDGFHWTEEARTAFEELKKVIAQLPVLAVPDFSKSFTLETDASGKGLGAVLLQAGRPLAFWSQALSSRAQNKSVYERELMALVQAVRKWKHYLMGSHFIILTDQRSLKFLTDQRLLTEEQFKWASKLIGFDFEIRFRPGKDNIVADALSRKSYFMPISVLQPTQWDSWEEESQTDAGMVSLIQDLMIDPKSHVGYELRKGRLFYKGKLVLPRGSSSIPTIFKDMHESPTGGHSGYFCTFKRIAGFVKGIRLKLWLQQAYYSLYPFPLKSVQGKDTIFVVVDRLTKYAHFLALAHPFTATEVAQLFIKEIAGTKLRFSTAYHPQSDGQTEVVNRCLETYLRCMTGTHPRKWPQWLSWAEFWFNTNYSISTKMSPFKALYGRDPPLLLKGSTIPSKVQSVNQLQQERDEILRELKENYAKPKTRIRAVEFQVGDWVYLKLQPYRLKSLATRPNEKLRPRFYGPYLVQERIGPVAYKLDLPAHSRIHSVFHVSLLKCAVQPTTPVQPLPSALTEDLMLEVYPEELLDVRTSSRGDLEVLLKWQHLPSIENSWESATTINTEFPAFHLEDKVKLHGGVIDRFKGKVRHAQGFHNVEGEKNIEAYKSYDLFDASLTPLGWKQVENLRGHVKASGLSKTIELVIVSPLLRTMQTAVGVFGGEACTDETSVPPLMNAGVGDSDRQAISSLNAPPFIAVELCREHLGVHPCDKRRSITDYRHMFPAIDFSLIENDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVTHSGFLFHSLSAFGNDCHPTVKSEICTHFANCELRSMVVVDKGMIGSDESSTNYSGKIPYGLDLPSDVADENHIGNGN 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02651 1067 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1 106 - -
Vimu10g02651 1067 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 1 295 - -
Vimu10g02651 1067 FunFam Transposon Ty3-G Gag-Pol polyprotein 178 267 - -
Vimu10g02651 1067 Gene3D - 46 168 IPR043128 -
Vimu10g02651 1067 ProSiteProfiles Chromo and chromo shadow domain profile. 741 779 IPR000953 -
Vimu10g02651 1067 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 74 106 - -
Vimu10g02651 1067 Gene3D - 178 259 IPR043128 -
Vimu10g02651 1067 Gene3D - 260 325 - -
Vimu10g02651 1067 SUPERFAMILY Ribonuclease H-like 489 599 IPR012337 -
Vimu10g02651 1067 SUPERFAMILY Chromo domain-like 705 780 IPR016197 -
Vimu10g02651 1067 SUPERFAMILY Phosphoglycerate mutase-like 806 1032 IPR029033 -
Vimu10g02651 1067 Coils Coil 622 642 - -
Vimu10g02651 1067 FunFam Phosphoglycerate mutase-like protein 1 801 1044 - -
Vimu10g02651 1067 Pfam RNase H-like domain found in reverse transcriptase 230 324 IPR041577 -
Vimu10g02651 1067 Pfam Chromo (CHRromatin Organisation MOdifier) domain 743 784 IPR023780 -
Vimu10g02651 1067 CDD RT_LTR 5 168 - -
Vimu10g02651 1067 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 2 203 IPR000477 -
Vimu10g02651 1067 SUPERFAMILY DNA/RNA polymerases 1 361 IPR043502 -
Vimu10g02651 1067 CDD HP_PGM_like 806 873 IPR013078 -
Vimu10g02651 1067 Gene3D - 519 646 IPR036397 GO:0003676
Vimu10g02651 1067 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 259 325 - -
Vimu10g02651 1067 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 21 168 IPR000477 -
Vimu10g02651 1067 CDD RNase_HI_RT_Ty3 261 375 - -
Vimu10g02651 1067 Gene3D - 805 1041 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02651 Vimu-Chr10 37871227 37878722 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02651 - - vun:114191455 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02651 10 37871227 37878722 Vimu10g02651 10 37871227 37878722 ECH