Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02645 ATGGCAACGGTGTCCGATCAGACCACTAGTATGTGCACTCACTGTGATCGGGCTATCCCTTCTGCAAATATTGATTTGCATTATGCTCATTGCTCTCGGAACCTTGAAAGATGCAAAATTTGTTGCGATATGGTTCCGAAAACACTTGCCGAGGAGCACTATTTGAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACTATGGAGCGTGATATTTTAGATATTCATATAGATGAAAATTGTCCTAGAAGGATGGTCACCTGTGAGTTCTGTGAGTTTCCCTTGCCAGCCATTGATCTGGTTGAGCATCAGGAAGTATGCGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAGTATGTTAGACTGCGTGAAAGATACAACCATGAAGATAGTTGCAATAGAATTCAAGAGAATTCTTCAAGGCCTTCAAGGTACGTGAGACCAGTTGAAAGAGACGAAGGTCCTCGAAGAAGGCCGCAGAATGATTTTCCAAGAAAGCGTGTTTTTTTCACAATAGCAATAACCGGTATTGCTGTTATTCTCGGGTCTATTTTTTTCCAGAGAAAGACAGATCTCAGCAATGTGCAATAA 600 0.4267 MATVSDQTTSMCTHCDRAIPSANIDLHYAHCSRNLERCKICCDMVPKTLAEEHYLNTHAPVACSLCSETMERDILDIHIDENCPRRMVTCEFCEFPLPAIDLVEHQEVCGNRTELCHLCNKYVRLRERYNHEDSCNRIQENSSRPSRYVRPVERDEGPRRRPQNDFPRKRVFFTIAITGIAVILGSIFFQRKTDLSNVQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02645 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 111 IPR013083 -
Vimu10g02645 199 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 193 - -
Vimu10g02645 199 ProSiteProfiles Zinc finger TRAF-type profile. 60 93 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02645 Vimu-Chr10 37823030 37827496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02645 - - gmx:100306673 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02645 10 37823030 37827496 Vimu10g02645 10 37823030 37827496 ECH