Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02635 ATGGATGCTAAGTTGGGCATTGCGCTATTTTTGTGTGTAGTTTGGGTGATGAGTGGCAATGCCACTGACCCTTGTGGCTCTCAACCGGATGAGTCGGACCTCAACGTGATTCCCGTCTACAGCAAATGCTCTCCGTTCAAGCCACCCAAGGCAGACTCGTGGGACACCAGGATCGTGGACATGGCCTCAAAAGACCCTCTCCGGGTCAGGTACCTATCCACCTTATTGGGCCAGAAGACCGTCTCCGCCGCCCCAATAGCTTCCGGTCAGGCCTTCAACATCGGTAACTACATCGTCAGGGCAAAGCTCGGAACCCCCGGTCAACTTTTGTTCATGGTTTTGGACACCAGCACCGACGAGGCTTTCGTCCCATGCTCCGGCTGCACGGGCTGCTCCGACACCACGTTCTCCCCCAAAGCTTCCACCAGCTACGGCCCATTGGACTGCTCCGTACCCCAGTGTGGTCAGGTCCGCGGGCTTTCCTGCCCCGCCACAGGAACCGGCGCTTGCTCCTTTAACCAAACCTACGCCGGCTCCTCTTTCTCCGCCACGCTCGTCCAAGACTCACTCAGATTAGCCGCTGATGTTATCCCTAACTACTCCTTCGGCTGCGTCAACGCCATCTCCGGGGCCTCAGTTCCGGCCCAAGGACTTTTGGGTCTGGGCCGCGGGCCACTGTCACTTCTCTCCCAGTCCGGGACAAACTACTCCGGTGTATTCTCTTACTGCCTTCCTAGCTTCAAATCGTACTACTTCTCCGGGTCGCTCAAACTCGGACCCGTGGGCCAGCCCAAGAGCATCCGGACCACCCCGCTTCTGCGCAACCCCCACCGGCCTTCTCTTTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGCGTCCTGGTGTCTTTCCCCAGCGAGTATCTTGAGTTTAACCCGTATACCGGATCCGGAACCATAATTGATTCGGGTACGGTGATCACCCGGTTCGTGGAGCCCGTGTACAACGCGGTGAGGGAGGAGTTCAGGAAGCAGGTGGGAGGAACGTTCTCGAGCATTGGAGCTTTCGACACGTGTTTTGTGAAGACGTATGAAAATCTGGCACCGCCAATTACCCTTCACTTCGAGGGATTGGACCTGAAGCTGCCATTGGAGAACAGCTTGATTCACAGCAGTGCCGGGTCGCTGGCTTGCCTTGCGATGGCGGCGGCGCCGGATAACGTGAACTCTGTGTTGAACGTGATTGCGAACTTTCAGCAACAGAATCTTAGGATTTTGTTTGATACCGTGAATAATAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAA 1311 0.5614 MDAKLGIALFLCVVWVMSGNATDPCGSQPDESDLNVIPVYSKCSPFKPPKADSWDTRIVDMASKDPLRVRYLSTLLGQKTVSAAPIASGQAFNIGNYIVRAKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQTYAGSSFSATLVQDSLRLAADVIPNYSFGCVNAISGASVPAQGLLGLGRGPLSLLSQSGTNYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVLVSFPSEYLEFNPYTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTFSSIGAFDTCFVKTYENLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02635 436 FunFam aspartyl protease AED3 76 259 - -
Vimu10g02635 436 Gene3D Acid Proteases 260 436 IPR021109 -
Vimu10g02635 436 ProSiteProfiles Peptidase family A1 domain profile. 97 431 IPR033121 -
Vimu10g02635 436 PANTHER ASPARTYL PROTEASES 8 429 IPR001461 GO:0004190|GO:0006508
Vimu10g02635 436 SUPERFAMILY Acid proteases 90 435 IPR021109 -
Vimu10g02635 436 Pfam Xylanase inhibitor C-terminal 282 431 IPR032799 -
Vimu10g02635 436 Gene3D Acid Proteases 76 259 IPR021109 -
Vimu10g02635 436 FunFam Aspartyl protease AED3 260 436 - -
Vimu10g02635 436 Pfam Xylanase inhibitor N-terminal 97 259 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02635 Vimu-Chr10 37725067 37726377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02635 87 436 Miscellaneous Gene Families AT1G77480 26.854 4.33e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02635 - - gmx:100816307 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02635 10 37725067 37726377 Vimu10g02635 10 37725067 37726377 ECH