Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02633 ATGACTGTAAAAGGGTTTTTTGAAGGTGGCGTTGCTTCCATCGTTGCAGGTTGCTCCACCCACCCACTCGACCTCATCAAAGTTCGCATGCAGCTTCAAGAAACGCACAACCTCCGCCCCGCGTTTGCGTTTCACGCGTCCACTCCAATGCCGCCTCCGCCTCCTTCCGGTCCTATATCAGTCGGCGTCCGAATCGTCCAGTCGGAGGGCGTCGCCGCGCTCTTTTCCGGCGTTTCCGCCACAATGCTCCGTCAGACGCTGTACTCCACCACCCGTATGGGCCTCTACGACGTGCTCAAGCGCCATTGGACCGACCCCGAGCAGGGCACCATGCCCCTCTCGCGAAAGATAACGGCGGGCCTGATCGCCGGAGGGATCGGCGCAGCCGTGGGGAACCCCGCCGACGTGGCCATGGTGCGAATGCAGGCCGATGGGCGGGCTCCGGCGGCTGAGCGGCGCAACTACAAGGGTGTGTTCGACGCGATACGGCGCATGAGCAACCAGGAGGGGGTTGGCAGCCTGTGGCGTGGCTCAGCGCTTACGGTGAACCGCGCGATGATCGTGACTGCTTCTCAGTTGGCGTCGTACGACCAGTTTAAGGAAACTATCCTCGGACACGGCTGGATGGAGGATGGGCTAGGGACCCACGTAGCTGCCAGTTTTGCGGCGGGTTTTGTGGCTTCTGTTGCGTCGAATCCTATTGATGTTATAAAGACAAGGGTGATGAACATGAAGGTTGAGGCTTACAATGGGGCCTTCGATTGTGCTATGAAGACTGTTAGGGCTGAAGGACCTCTCGCCCTTTATAAGGGTTTCATCCCTACAATCTCAAGGCAGGGTCCTTTTACCGTCGTGCTCTTTGTCACCCTCGAACAAGTCAGGAAGCTGCTCAAGGAGTTTTGA 903 0.5836 MTVKGFFEGGVASIVAGCSTHPLDLIKVRMQLQETHNLRPAFAFHASTPMPPPPPSGPISVGVRIVQSEGVAALFSGVSATMLRQTLYSTTRMGLYDVLKRHWTDPEQGTMPLSRKITAGLIAGGIGAAVGNPADVAMVRMQADGRAPAAERRNYKGVFDAIRRMSNQEGVGSLWRGSALTVNRAMIVTASQLASYDQFKETILGHGWMEDGLGTHVAASFAAGFVASVASNPIDVIKTRVMNMKVEAYNGAFDCAMKTVRAEGPLALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKEF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02633 300 PRINTS Mitochondrial brown fat uncoupling protein signature 208 226 IPR002030 GO:0006839|GO:0031966
Vimu10g02633 300 PRINTS Mitochondrial brown fat uncoupling protein signature 285 300 IPR002030 GO:0006839|GO:0031966
Vimu10g02633 300 PRINTS Mitochondrial brown fat uncoupling protein signature 96 108 IPR002030 GO:0006839|GO:0031966
Vimu10g02633 300 PRINTS Mitochondrial brown fat uncoupling protein signature 165 182 IPR002030 GO:0006839|GO:0031966
Vimu10g02633 300 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 3 296 - -
Vimu10g02633 300 SUPERFAMILY Mitochondrial carrier 3 293 IPR023395 -
Vimu10g02633 300 Gene3D Mitochondrial carrier domain 3 299 IPR023395 -
Vimu10g02633 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 296 IPR018108 -
Vimu10g02633 300 Pfam Mitochondrial carrier protein 111 204 IPR018108 -
Vimu10g02633 300 Pfam Mitochondrial carrier protein 213 298 IPR018108 -
Vimu10g02633 300 Pfam Mitochondrial carrier protein 3 104 IPR018108 -
Vimu10g02633 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 202 IPR018108 -
Vimu10g02633 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 102 IPR018108 -
Vimu10g02633 300 FunFam Mitochondrial uncoupling protein 5 4 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02633 Vimu-Chr10 37700864 37708371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02633 1 299 Miscellaneous Gene Families AT5G09470 59.281 4.71e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02633 K15104 - gmx:100790234 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02633 10 37700864 37708371 Vimu10g02633 10 37700864 37708371 ECH