Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02632 ATGGCCAACACAAATGCAGAATTGTCTCAGGGAAATGGTGGTGCTTCTTATTCTTATTCCCAACCTGGGTCACAAGAGCATCAACAACGTTCTCAAGGTGGCACTGGCAATATGATTTTCAAGAGTGGACCACTTTTCATTTCATCCAAAGGAATTGGATGGACATCTTGGAAGAAAAGATGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGGAGTGATCCAAATGCAATCCCTCAAAAGGGAAATGAAGTTAATTTGACCCTTGGAGGCATTGACCTCAACAATTCAGGCAGTGTTGTTATCAAAGCAGATAAGAAACTTTTGACTGTGCAATTTCCTGATGTTCATGATGGAAGAGCATTCACACTTAAGGCTGAAACCATGGAGGATTTATACGAGTGGAAGACTGCACTTGAGAATGCTTTAGCACTGGCACCTAGTGCTACCAATGGAACGGAGCAAAATGGTATCTCCAGGAACAAACAGACTGATTCAATTGATATTTCTGTGAACCAGTTGAAGGATAGAGAACCAGCTAAATCTACTGTTATTGGTCGACCAATTTTACTTGCTTTGGAGGATGTTGATGGAACGCCATCATTCTTGGAGAAAGCCCTAACATTCATAGAAGAGCATGGAGCAAATGTGGAAGGAATCTTGCGACAAGCAGCTGATGTTGATGAGGTTGAACGTCGAGTTCGGGAATATGAACAAGGAAGAGTTGAATTTTCTCCAGATGAGGATGCACATGTTATTGGAGACTGTATTAAGCATGTACTTCGCGAATTACCATCTTCTCCAGTCCCCGCATCTTGTTGCAAAGCACTGTTAGAATCTTGCCGAACTGAGCGTGGTAGTAGGGTTGCTGCTATGCGTGAAGCAATAAACGACACTTTCCCAGAACCAAATCGCCGCTTATTGCAAAGAATACTCATGATGATGCAAAGTGTGGCTTCACGCAAAGCTGTGAATAGAATGAGCTCCTCAGCTGTGGCAGCTTGCATGGCGCCTTTACTTCTTCGACCCCTTTTGGCCGGAGAATGTGAAATTGAAAATGATTTTGATGTAGGTGGTGATGGTTCTATTCAACTTTTACAAGCTGCTGCTGCAGCAAACCATGCTCAAGCAATTTGCATAACCTTATTAGAAGAATATAACAACATATTTGGGGAAGGTTCCATGTCCCCTGACATATACACTGACTCAGATGAAGTGAGTGGATCTGAGAGTGAGGACGAGGCAACTGATGATGAGGTGTCTTATGATGATGATGATGAAGAGTATGATGAAGAAGAAGATGATGAAGAATCAGTACATGATAGTGAAGGAGAAGATGATCTTGTCAGTGAATCGTACAGTGGAACTGAAGATTCAGAGGCCGATTATGAGCATCCCTACACTTTTTCCTCCAAGACTCTTACATGGCTGCATTCACTGTTATGTGGAGATCTAGGAGGAGAGAGGAAAGGCGAAAATTCTTATTTAATTGTTTTTGGTAATGAACAGGAGCATGACCATGCTAGTTCAAGTTCGAAATCCTCAGTTTTGACTGAAAAATCTAAAGCCACTCGAAAGTTATCATCAAAGTCACTAGAAGTCTCACTGCCTCAACAAAAAGATATCAAAAGCTCTGAACATCTGACGAGTCCAAAGAAGACTGACTACAGTGATCAGTCCAATAAGCGTGTTGATAAAGTTGGAAATGCTATTGATGAAGCTGCATTGCAAAATTTAAATTCTCCTGGCCCTGCTATAAAGAAATCCAACACCATGTCCAATGGCCCAGCACCTCGTCATCGCACAACATTGGGGCGCACCTCAGCAAGGAAGAATCTTTCCATGGAATCCATAGATATTTCTATAGAAGACGAGGATGAAATTGAAAGGCTTGAAGCTGCCAGGTCAGAATTACAAACTCAAATTGCAGAGCAGGTGAAGGCAAATGCAGAGCTGCAATCTCAAGTGGATAATCAAAAGAAAGCCTTGGACGAGCGTCGGCTTTCTCTTGAGCAGGAAGTTGCTAGATTACATGAACAGTTGAACAAGGAAAAGAATTCTCGGGCAGCTCTCGAGAACAAAACAGAGCTTGAGAAATTAGCACTGGTAGAAGCAGATCTTGCCAGTTTAGAGTGGAAGGTTGGGGAACTTGTGGCTAGGCTTAATGCACAACTTGAAAGGAATCTTGGGACTACTTCTGAGTTCTCGAATCAACCACGACAGATGTCAAATCAGGAAAGAAGATTAAAATACAAGGCAGATGCTGAAGCTGCTGCCTCAACACAATCTGATAGATCAATAAGTAAGGGTACGGTAATGGCCCAACAACAGGACACTCATACTGTCGGAGCAGAAAGTGATACTGAACGAAAGCCAGAATCAACACCTTTACCAAACAAACACCCACCAAGTAGCTCCAAGCGATCAAGTTCAAAGGGCGAGGGAGGAAATTCCACTCCTTCTGCACTCACAAAACTGACAACCAGACTGAACCTTTTGAAGGTGGCCCGAAATCAGATTGCAAATGAACTCCAAAATTTGGATAAAGGGCGAGACTCAAGTCGCTCGTCACACAATGCGGAAAAAGGAAAAGGGTCTGAGCGTCATCAAACACTTCCATCACCCAAAACATATGGAGGGTCTGAAGCTCACTCTGTGCCAAACCAAGAAAAAGGTAAGGGGTCAGAATCATCAGACAAAGGATCAAGCAAAGGAAAATTATCTCAACACAGTTCATCAGACAAACTTAAAAAATCAGACAGTCATCCAGCCCACCACACTGATGGATGGAATCAACAAGCAAAACACTTGGAAAGAGGAAGGTCAGATGGCCATCAGATATATAATGTGGACAAAGGCCGGTGA 2868 0.4264 MANTNAELSQGNGGASYSYSQPGSQEHQQRSQGGTGNMIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAIPQKGNEVNLTLGGIDLNNSGSVVIKADKKLLTVQFPDVHDGRAFTLKAETMEDLYEWKTALENALALAPSATNGTEQNGISRNKQTDSIDISVNQLKDREPAKSTVIGRPILLALEDVDGTPSFLEKALTFIEEHGANVEGILRQAADVDEVERRVREYEQGRVEFSPDEDAHVIGDCIKHVLRELPSSPVPASCCKALLESCRTERGSRVAAMREAINDTFPEPNRRLLQRILMMMQSVASRKAVNRMSSSAVAACMAPLLLRPLLAGECEIENDFDVGGDGSIQLLQAAAAANHAQAICITLLEEYNNIFGEGSMSPDIYTDSDEVSGSESEDEATDDEVSYDDDDEEYDEEEDDEESVHDSEGEDDLVSESYSGTEDSEADYEHPYTFSSKTLTWLHSLLCGDLGGERKGENSYLIVFGNEQEHDHASSSSKSSVLTEKSKATRKLSSKSLEVSLPQQKDIKSSEHLTSPKKTDYSDQSNKRVDKVGNAIDEAALQNLNSPGPAIKKSNTMSNGPAPRHRTTLGRTSARKNLSMESIDISIEDEDEIERLEAARSELQTQIAEQVKANAELQSQVDNQKKALDERRLSLEQEVARLHEQLNKEKNSRAALENKTELEKLALVEADLASLEWKVGELVARLNAQLERNLGTTSEFSNQPRQMSNQERRLKYKADAEAAASTQSDRSISKGTVMAQQQDTHTVGAESDTERKPESTPLPNKHPPSSSKRSSSKGEGGNSTPSALTKLTTRLNLLKVARNQIANELQNLDKGRDSSRSSHNAEKGKGSERHQTLPSPKTYGGSEAHSVPNQEKGKGSESSDKGSSKGKLSQHSSSDKLKKSDSHPAHHTDGWNQQAKHLERGRSDGHQIYNVDKGR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02632 955 MobiDBLite consensus disorder prediction 760 783 - -
Vimu10g02632 955 CDD RhoGAP 201 339 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 911 955 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 577 604 - -
Vimu10g02632 955 Pfam PH domain 41 144 IPR001849 -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 394 464 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 504 563 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 583 604 - -
Vimu10g02632 955 CDD PH 41 140 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 849 870 - -
Vimu10g02632 955 ProSiteProfiles PH domain profile. 38 145 IPR001849 -
Vimu10g02632 955 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 13 860 - -
Vimu10g02632 955 Gene3D - 24 146 IPR011993 -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 546 563 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 406 454 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 733 824 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 871 893 - -
Vimu10g02632 955 SUPERFAMILY PH domain-like 30 145 - -
Vimu10g02632 955 Gene3D Rho GTPase activation protein 169 392 IPR008936 -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 845 955 - -
Vimu10g02632 955 Coils Coil 622 695 - -
Vimu10g02632 955 SMART PH_update 39 147 IPR001849 -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 801 824 - -
Vimu10g02632 955 SMART RhoGAP_3 198 388 IPR000198 GO:0007165
Vimu10g02632 955 SUPERFAMILY GTPase activation domain, GAP 200 393 IPR008936 -
Vimu10g02632 955 ProSiteProfiles Rho GTPase-activating proteins domain profile. 192 391 IPR000198 GO:0007165
Vimu10g02632 955 MobiDBLite consensus disorder prediction 529 545 - -
Vimu10g02632 955 MobiDBLite consensus disorder prediction 1 35 - -
Vimu10g02632 955 Pfam RhoGAP domain 201 344 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02632 Vimu-Chr10 37697462 37706729 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02632 - - vra:106760371 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02632 10 37697462 37706729 Vimu10g02632 10 37697462 37706729 ECH