Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02627 ATGCGACGAACTTGTGAGGTAGAATCTTCAAACATCATCAAATTATCAGCAATTTACCGTAGCAAGCACATCTCTTCTGAATCCTCATCGCTCCCATGGATATCTCCTCTCAAATTCACCAAACCCGCAAAACCCAAACCGGATCCTCCGCCGGAAACCGCCGCGGAACCTCCGAGGAAGCGGAAGTTCATTTCTCACGACGGCGCCATCGATTTGATAAGACGCGAGAAGGACCCGCAGCACGCCTTGAAGATATTCAACATGGTTTCACAACAGAAGGGGTTTCAACACAACAATGCCACCTACGCCACCATTCTCGAAAAGCTCGCTCGCTGCAACAAGTTCCACACCGTGGATCAAGTCATTCACCAAATGACCTACGAAACCTGCAAATTCCACGAGGGTATATTCGTCAACCTCATGAACCATTTCTCCAAATCCTCCCTTCACGAAAAAGTGCTCCAAGCTTTTTTCTCCATTCAACCAATCGTCAGGGACAAACCCTCCCCCAAAGCCCTCACCACTTGCCTCAACCTTTTGCTCGAATCGAACCGCGTCGATTTGGCTCGAAAATTGCTCTTGCATGCCAAACGCGGTCTAACGCACGAGCCAAACGTTTGCGTATTCAATATCCTTGTGAAGTATCACTGCAAGAATGGAGACCTGGAATCTGCTTTTGAAGTTGTAAAGGAAATGAGAAACTGTGAGTTTTCTTACCCTAATTTAGTTACCTACTCCACCCTTATGGATGGACTTTGTCGAAATGGAAGACTCAGAGAAGCCTTTCAATTGTTTGAGGAAATGGTTTCGAGGGATCACATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAATGGATTTTGCCGTGAAGGGAAACCTGACCACGCTAGAAATGTGATTGAGTTTATGAAGAGTAATGGATGTTATCCGAATGCGTATAATTACTCAGCATTGGTGAATGGTTTGTGTAAAATTGGGAAATTGGAAGACGCAAAAGGGGTTTTGGCTGAGATGAAGAACGCTGGTTTGACACCGGATGCAGTTATATACACTAGTTTGATCAATTACTTGTGTACGAATGGACAAGTTGGTGAAGGTATTCAGTTGCTTGAAGAAATGAAGGAGAATAAGATTCAAGCTGACACTGTTACGTTCAATGTGATACTTGGGGGGTTGTGTAGAGAAGGTAGATTTGAGGAGGCTCTAGATATGCTTGGGAAACTCCCTCAGCAGGGTCTGTATTTGAACAAAGGTAGCTACAGGATTGTTCTGAATTCCTTGACCCGAAAAGGTGAGTTGAAAAGGGCAAAGGAGTTACTGGGGTTAATGCTAAGTAGGGGTTTTCTGCCCCATTATGCCACTTCAAATGAATTGTTGGTTTGTCTTTGTAAGGGGGGGATGGCCGATGATGCTGCCAGGGCACTATTTGATTTGGTGGAGATGGGTTTTCAGCCAGGACTTGAGACATGGGAAGTTTTAATTGGGTTAATCTGCAGAGACAGAAAGTTGTTGTATGTTTTTGAGCTGCTTGATGAATTACTGGTCACATATACATGA 1560 0.4442 MRRTCEVESSNIIKLSAIYRSKHISSESSSLPWISPLKFTKPAKPKPDPPPETAAEPPRKRKFISHDGAIDLIRREKDPQHALKIFNMVSQQKGFQHNNATYATILEKLARCNKFHTVDQVIHQMTYETCKFHEGIFVNLMNHFSKSSLHEKVLQAFFSIQPIVRDKPSPKALTTCLNLLLESNRVDLARKLLLHAKRGLTHEPNVCVFNILVKYHCKNGDLESAFEVVKEMRNCEFSYPNLVTYSTLMDGLCRNGRLREAFQLFEEMVSRDHIVPDPLTYNVLINGFCREGKPDHARNVIEFMKSNGCYPNAYNYSALVNGLCKIGKLEDAKGVLAEMKNAGLTPDAVIYTSLINYLCTNGQVGEGIQLLEEMKENKIQADTVTFNVILGGLCREGRFEEALDMLGKLPQQGLYLNKGSYRIVLNSLTRKGELKRAKELLGLMLSRGFLPHYATSNELLVCLCKGGMADDAARALFDLVEMGFQPGLETWEVLIGLICRDRKLLYVFELLDELLVTYT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 316 348 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 384 417 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 420 451 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 280 313 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 349 382 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 243 277 IPR002885 -
Vimu10g02627 519 NCBIfam pentatricopeptide repeat 208 240 IPR002885 -
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Vimu10g02627 519 MobiDBLite consensus disorder prediction 38 59 - -
Vimu10g02627 519 Pfam PPR repeat 307 340 IPR002885 -
Vimu10g02627 519 Pfam PPR repeat 202 233 IPR002885 -
Vimu10g02627 519 Pfam PPR repeat family 346 395 IPR002885 -
Vimu10g02627 519 Pfam PPR repeat family 240 290 IPR002885 -
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vimu10g02627 519 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 74 377 - -
Vimu10g02627 519 Pfam PPR repeat 420 449 IPR002885 -
Vimu10g02627 519 Gene3D Tetratricopeptide repeat domain 59 236 IPR011990 GO:0005515
Vimu10g02627 519 Gene3D Tetratricopeptide repeat domain 237 304 IPR011990 GO:0005515
Vimu10g02627 519 Gene3D Tetratricopeptide repeat domain 445 516 IPR011990 GO:0005515
Vimu10g02627 519 Gene3D Tetratricopeptide repeat domain 377 444 IPR011990 GO:0005515
Vimu10g02627 519 Gene3D Tetratricopeptide repeat domain 305 376 IPR011990 GO:0005515
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vimu10g02627 519 SUPERFAMILY TPR-like 169 406 IPR011990 GO:0005515
Vimu10g02627 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02627 Vimu-Chr10 37664748 37666307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02627 241 519 Glycosyltransferase AT1G05670 29.617 8.64e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02627 - - pvu:PHAVU_009G143500g 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02627 10 37664748 37666307 Vimu10g02627 10 37664748 37666307 ECH