Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02622 ATGGATTCCATTCCCTTTCGCGATGGCAACATACACGCGATTCTTGACTCTCGATATCTCAACTCGCCACTGGATGTTAATCACACTTTGCAGACTCATTCCTCTCTCATTCGGAGGCTTTCTCAAGAAAGGGAGTTAGAGGGCCACCTTGGCTGTGTCAATGCGGTGGCTTGGAATTCGAAAGGTACATTGTTGATATCCGGATCAGATGATACTCGGCACAAGGCAGTTAATTGTTTCCCTGAAATTTTGCAGATCAATATCTGGAGCTATTCTGGTAGAAAACTTCTACATTCAATTGACACAGGACATACAGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCTTCTGGAGCCGGAGATGCTGAAGTAGTCCGTTTATTTAACTTGTCTCGCCTAAGTGGGAGTGGATCTAGCGACAATTCAATCATTGCTCCATCTGCACTTTACCAATGCCATGCTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGCAACCCTAATGTAGTATGGAGTGCTAGTGAAGATGGGACCTTGAGACAACATGATTTTCGGGAAGGTACCTCATGTCCTCCAGCTGGGTCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGTTCTAAAAGATCACTTGCTGATCCTCCTAAACAAGTCCTTTCTTTAAAGTCTTGTGATATTAGTTCAACTAGGCCGCATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGGTTATATGATAGAAGGATGCTGCCACCTCTAAGCTCATGTCGAAAAAGAATGTCTCCTCCTCCTTGTGTTAATTATTTTTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTACACTTAACTCATGTTACATTCAGTCCTGATGGACATGAGGTTCTCCTCAGCTATAGTGGAGAGCATGCTTACCTGATGAATGTAAATCATGCTGGAGTGAATGAGATGCAATATACTTCAGGTGACGTATCAAAGATGATGACTTACTCTCCGATAGTTAATGGGATAGAGTTGCAGTCTTGTGTGTCTAATGTCTTCCCAAACGGGTTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCAGGAAACTGATAAAATATGCTAAGAAATCATTGGACAATGGGACACCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAATGGCTATAGCCATATCATTGGGTCTGCACTTAAACATGAATGCTTGTGCACTCGTGCTGCATTATTGATCAAGAGGGACTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGAAAAATTGATAATTCCTCCTATAAAGCACTGTTCTACATGTCAGAAGCACTGTCACAGTTGGGTAGACATGAAGATGCTTTGGATTTTGCTGTTGCTTCCCATTCACTGGCCCCACTCAAATCTGAAGTTGCAGAGAGAGTGGAGAATGTGAAGAAGGATATTGCTTTAGCTGAAGCTGAAAAAAATAGCAAGGCGAATGATGGTGCATCAAGGTCTGACATTCGAGGTGGAAGAATATTATCATTAAGTGACATACTCTATCGCCCTGAGGCTAACGGTGATATTCCACAAGATGGTTCTAGATCAGACAGGGATGATTCTGATTATGATGAAGAATTGGAGTTGGACTTTGAAACATCAATATCCGGTGATGAGGCACAAGATCTTGATTCAAATATTCTTCATGGAAGTTTAAATGTTAGAATTCACCGAAGAGGTGACTCTAGAGACAATGCAGGTGCTAGTGGTCCAAGCGATTCACCTTCATCTTCGTCACAGAGCAGTAGAACATGTTATCTGCCTGAACCAGCTGTTGATATGAAACAGAGATTTATTGGCCATTGCAATATTGGGACGGACATAAAACAGGCCAATTTTCTTGGTCAAAGAGGAGAATATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACTGGTAGACTTGTAAAAATTCTAAATGGTGATGGATCTGTTGTAAATTGTATACAATGCCATCCATTTGATTTTGTTGTCGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCCCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGCTGCTATGGAGAGCAATCAACAAAAGTTATCCCGTAGCCGCAATTCTATATTGCAGGCTGCACGTCTCATCTTTGACAGTGCGCCCAGGTGGTCAGGAGGGTTGGATTTAATGCCCTTTGAGCTTTTGGAACCATTTAGAATGCACGACTTTCCTGAGGGTTCGTTACGCTTGCGTCCATTTGAATGCGCTCAAAGCTAA 2394 0.4231 MDSIPFRDGNIHAILDSRYLNSPLDVNHTLQTHSSLIRRLSQERELEGHLGCVNAVAWNSKGTLLISGSDDTRHKAVNCFPEILQINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVVRLFNLSRLSGSGSSDNSIIAPSALYQCHARRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHAYLMNVNHAGVNEMQYTSGDVSKMMTYSPIVNGIELQSCVSNVFPNGFPIKKNIAAKLDKCRKLIKYAKKSLDNGTPYYGIEACNEVLNGYSHIIGSALKHECLCTRAALLIKRDWKNDAHMAIRDCYAARKIDNSSYKALFYMSEALSQLGRHEDALDFAVASHSLAPLKSEVAERVENVKKDIALAEAEKNSKANDGASRSDIRGGRILSLSDILYRPEANGDIPQDGSRSDRDDSDYDEELELDFETSISGDEAQDLDSNILHGSLNVRIHRRGDSRDNAGASGPSDSPSSSSQSSRTCYLPEPAVDMKQRFIGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLVKILNGDGSVVNCIQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLAAMESNQQKLSRSRNSILQAARLIFDSAPRWSGGLDLMPFELLEPFRMHDFPEGSLRLRPFECAQS 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02622 797 MobiDBLite consensus disorder prediction 592 618 - -
Vimu10g02622 797 SUPERFAMILY TPR-like 412 485 IPR011990 GO:0005515
Vimu10g02622 797 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 10 748 IPR045151 -
Vimu10g02622 797 FunFam Transducin family protein / WD-40 repeat family protein 578 750 - -
Vimu10g02622 797 Gene3D Tetratricopeptide repeat domain 367 501 IPR011990 GO:0005515
Vimu10g02622 797 Pfam WD domain, G-beta repeat 672 708 IPR001680 GO:0005515
Vimu10g02622 797 Pfam WD domain, G-beta repeat 43 71 IPR001680 GO:0005515
Vimu10g02622 797 SUPERFAMILY WD40 repeat-like 42 711 IPR036322 GO:0005515
Vimu10g02622 797 Gene3D - 626 760 IPR015943 GO:0005515
Vimu10g02622 797 Gene3D - 29 358 IPR015943 GO:0005515
Vimu10g02622 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 71 IPR001680 GO:0005515
Vimu10g02622 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 708 IPR001680 GO:0005515
Vimu10g02622 797 MobiDBLite consensus disorder prediction 600 618 - -
Vimu10g02622 797 MobiDBLite consensus disorder prediction 537 556 - -
Vimu10g02622 797 Coils Coil 487 514 - -
Vimu10g02622 797 SMART WD40_4 670 709 IPR001680 GO:0005515
Vimu10g02622 797 SMART WD40_4 39 90 IPR001680 GO:0005515
Vimu10g02622 797 SMART WD40_4 93 136 IPR001680 GO:0005515
Vimu10g02622 797 SMART WD40_4 624 667 IPR001680 GO:0005515
Vimu10g02622 797 SMART WD40_4 150 190 IPR001680 GO:0005515
Vimu10g02622 797 SMART WD40_4 225 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02622 Vimu-Chr10 37606259 37617047 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02622 K11807 - gmx:100793917 1327.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02622 10 37606259 37617047 Vimu10g02622 10 37606259 37617047 ECH