Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02618 ATGCCTTTATTGGTTCCCAGAGGAAGAATCATCAGAAGAAGCATGACATGTCTATGCCTTACCCATTCACTCACTCAAACCCATAACCCCTTCCCTTATTCTCTACACAATAACAGAAACTCCCTCTTTCAGTTTTTCTCGGCTATTCTCCGACCTTCAATTCGCCCCTTTTCCGCTAACTTCAAGGGTGGGCCCACGCTTTCTGCATCTTCTTCTGCACTAATGGCCAATTTCAACGCTGATTCCGTCACTTACCTCACTCAGCGAGAAGCCGCTGAGATCGATGAGACGCTCATGGGTCCTCTCGGCTTCAGCGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTGCTTCCATTTCTGAGGTTTACAAACCCACTGAGCATGGTCGGGTTCTTACTATATGTGGCCCCGGTAACAATGGTGGTGACGGTCTGGTGGCTGCTCGCCACCTGCATCACTTTGGTTATAAGCCCTTTGTGTGTTACCCAAAGCGTACCCCCAAGCCTCTCTATTCTGGATTAGTTACTCAGCTTGAAGCACTGTCTATCCCTTTCTTGTCAGTGGAAGAACTACCGTTAGATCTTTCAAATGACTTTGACATTCTTGTGGATGCGATGTTTGGATTCTCATTTCATGGTTCTCCCAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCTCTTTGCATGATAATGATCAAATTGATAAAAAAAGACCAGTTATAGTCTCTGTAGATATTCCCTCTGGTTGGCATGTTGAAGAGGGAGATGTTGATAGTACAGGCATTAAGCCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTAGGCGCAAAGAAGTTTGGCGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCAGCTATTGCAGAAAAATATAAGCTTGTGCTTCCACCTTATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGATATCTCAGCTCTAAGAGAGAATTACATCTCACCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCAATTAATCAGTTTCGCAAATGGTTTGATGATGCAATGGCTGCTGGTTTGAAGGAACCAAATGCCATGGCCTTGTCAACTGTAGGGAAGGATGGACAACCCTCATCACGAATGGTATTGCTAAAAGGGTTGGATAAAGACGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTGTCTGAAAATCCTCGAGCATCTCTTCTTTTTTACTGGGATGGTTTAAACCGTTCGGTACGGGTAGAAGGACCTGTTCAGAAAGTCTCTGATGAGGAATCGGAACAATATTTCCACAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTTAGCAAGCAGAGTACTGTAGTACCTGGTAGGCATGTTCTTTATCAGGAGTACAAAGAACTGGAACAAAAATACGCCGATGGAAGTATGATCCCTAGACCTAACTGGGGAGGATATAGACTCACACCACAACTTTTTGAGTTTTGGCAAGGACAGAAATCTCGTTTGCATGACAGGTGGTTGCATCCTCGTTTGTGA 1575 0.4508 MPLLVPRGRIIRRSMTCLCLTHSLTQTHNPFPYSLHNNRNSLFQFFSAILRPSIRPFSANFKGGPTLSASSSALMANFNADSVTYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVAASISEVYKPTEHGRVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYSGLVTQLEALSIPFLSVEELPLDLSNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLHDNDQIDKKRPVIVSVDIPSGWHVEEGDVDSTGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLVLPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPINQFRKWFDDAMAAGLKEPNAMALSTVGKDGQPSSRMVLLKGLDKDGFVWYTNYESRKARELSENPRASLLFYWDGLNRSVRVEGPVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEQKYADGSMIPRPNWGGYRLTPQLFEFWQGQKSRLHDRWLHPRL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02618 524 Pfam Pyridoxamine 5'-phosphate oxidase 356 442 IPR011576 -
Vimu10g02618 524 NCBIfam NAD(P)H-hydrate epimerase 88 282 IPR004443 -
Vimu10g02618 524 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 333 522 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vimu10g02618 524 ProSiteProfiles YjeF N-terminal domain profile. 91 307 IPR004443 -
Vimu10g02618 524 Hamap NAD(P)H-hydrate epimerase [nnrE]. 87 322 IPR004443 -
Vimu10g02618 524 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 495 519 IPR019576 -
Vimu10g02618 524 FunFam NAD(P)H-hydrate epimerase 341 523 - -
Vimu10g02618 524 SUPERFAMILY FMN-binding split barrel 341 523 - -
Vimu10g02618 524 PANTHER NAD(P)H-HYDRATE EPIMERASE 75 447 IPR032976 -
Vimu10g02618 524 Gene3D - 334 523 IPR012349 -
Vimu10g02618 524 NCBIfam pyridoxamine 5'-phosphate oxidase 347 520 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vimu10g02618 524 FunFam NAD(P)H-hydrate epimerase 83 324 - -
Vimu10g02618 524 SUPERFAMILY YjeF N-terminal domain-like 84 314 IPR036652 -
Vimu10g02618 524 Gene3D - 82 324 IPR036652 -
Vimu10g02618 524 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 505 518 IPR019740 GO:0016638
Vimu10g02618 524 Pfam YjeF-related protein N-terminus 107 279 IPR004443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02618 K23998 - gmx:100795497 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02618 10 37559260 37565951 Vimu10g02618 10 37559260 37565951 ECH