Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02604 ATGGTTTTCACAGCCACGCTGTGTTCAAGCTTCTCTTCAGCACCTTCTTCCTCCTCTCGCTACTCACTCTCCGCAACTCCCTCCTACTGTGCATTTCCCCCACGCAGGTTCGCGACGCCAAGAATGGGACCGTCTCCGGCTCAGGCCCAGGCCCAGGCCCAGTCCAAGGAGGCCAAGCTCTGGGGCGGGAGGTTCAAGGAGGGTGTAACCGACGCCGTGGAGAGGTTCACGGAGTCGATCTCCTTCGACAAGCAGCTCTACAAGCAAGACATAAAGGGAAGCAGAGCGCATGCGTCGATGCTCGCTCACCAGGGTTTGATAAGCGCGAGCGACAGAGACTCCATTCTTGAAGGTTTGGAGGAAATAGAGAGGCGCATTGAGAATGGAGAGTTCAATTGGAGAGCTGACAGAGAGGACGTGCACATGAACATCGAGGCTGCGCTCACCGACATGATCGGTGAGCCTGCGAAGAAGCTCCACACCGCTCGGAGTAGGAACGATCAGGTTTTGACTGACTTTCGCCTCTGGTGCCGCGACGCCATCGACGGGATACTCGTGAGCATGAAGCAGCTTCAGGTGTCACTGCTGACCCTGGCTTTGAGGAACGAGGGTCTCATTGTTCCTGGTTACACTCACTTGCAGCGCGCGCAGCCCGTTTTGCTGCAGCATCTTCTCTTGGCTTATGTTGAGGAGCACTGTGTATATGATGTGTTTATCGTTGTTATTATTTTGAAAATGTATGTTCTATCTGATTTATTCACTCACTTAATTAAGGAGGTGATACGGATTTTGGGGCGCTTGGTAGATTGTAGAGCTAGGATGAATTTCTGCCCCTTAGGGGCTTGTGCATTGGCTGGTACAGGGCTTCCCATAGATCGATTCATGACTTCAGAAGCTTTAGGATTTACTGCTCCCTTGAGGAATAGTATAGATGCAGTTTCGGACCGAGATTTTGTACTGGAGTTTCTTTCTGCAAATGCCATCACAGCTGTGCATCTTTCTCGGCTTGGTGAGGAGTGGGTACTGTGGGCTTCCGAGGAATTTGGGTTTATCACACCAAGCGACTCTGTTTCAACTGGAAGTAGTATTATGCCTCAGAAAAAGAATCCAGATCCCATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGGGACCTGGTTACGCTTCTCACGTTGTGCAAAGGTCTTCCTCATGCTTACAACCGTGATTTGCAGGAAGACAAAGAACCAGTATTTGACAGCGTGAAAACTATTTTGGGGATGCTTGAGGTATCAGCAGAATTTGCTCTCAATATTTCCTTCAATCGGGAAAGAATACAAAAAGCATTACCTGCTGGTCATCTTGATGCAACCACACTTGCCGATTATCTTGTTAATAAGGGTGTGCCATTTAGAACTTCTCATGATATCGCTGGAAAATCTGTTGCTTTATGTACACTTAAGAACTGCCAACTGCTGGACTTAAGTCTTGATGAGCTCAGAAGTATAAATCCAGTTTTTGAAGAGGACGTGTATGATTTTCTTGGGGTAGAAAATGCGATCCAGAAATTTGTCTCTTACGGTTCCACCGGGTCAGCATGTGTTGCCAGCCAAATTGACTATTGGATGAAAAAACTTGAAATGAAGTAA 1632 0.4822 MVFTATLCSSFSSAPSSSSRYSLSATPSYCAFPPRRFATPRMGPSPAQAQAQAQSKEAKLWGGRFKEGVTDAVERFTESISFDKQLYKQDIKGSRAHASMLAHQGLISASDRDSILEGLEEIERRIENGEFNWRADREDVHMNIEAALTDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDGILVSMKQLQVSLLTLALRNEGLIVPGYTHLQRAQPVLLQHLLLAYVEEHCVYDVFIVVIILKMYVLSDLFTHLIKEVIRILGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSEALGFTAPLRNSIDAVSDRDFVLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNISFNRERIQKALPAGHLDATTLADYLVNKGVPFRTSHDIAGKSVALCTLKNCQLLDLSLDELRSINPVFEEDVYDFLGVENAIQKFVSYGSTGSACVASQIDYWMKKLEMK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02604 543 Gene3D Fumarase/aspartase (Central domain) 256 531 - -
Vimu10g02604 543 SUPERFAMILY L-aspartase-like 255 540 IPR008948 GO:0003824
Vimu10g02604 543 FunFam Argininosuccinate lyase 58 163 - -
Vimu10g02604 543 PRINTS Fumarate lyase superfamily signature 159 177 IPR000362 -
Vimu10g02604 543 PRINTS Fumarate lyase superfamily signature 360 376 IPR000362 -
Vimu10g02604 543 PRINTS Fumarate lyase superfamily signature 204 222 IPR000362 -
Vimu10g02604 543 PRINTS Fumarate lyase superfamily signature 316 343 IPR000362 -
Vimu10g02604 543 Gene3D - 57 161 IPR024083 -
Vimu10g02604 543 Gene3D Fumarase/aspartase (Central domain) 162 233 - -
Vimu10g02604 543 Pfam Argininosuccinate lyase C-terminal 450 515 IPR029419 -
Vimu10g02604 543 Pfam Lyase 63 231 IPR022761 -
Vimu10g02604 543 Pfam Lyase 261 385 IPR022761 -
Vimu10g02604 543 PRINTS Argininosuccinate lyase family signature 395 414 - -
Vimu10g02604 543 PRINTS Argininosuccinate lyase family signature 158 180 - -
Vimu10g02604 543 PRINTS Argininosuccinate lyase family signature 360 376 - -
Vimu10g02604 543 PRINTS Argininosuccinate lyase family signature 199 219 - -
Vimu10g02604 543 PRINTS Argininosuccinate lyase family signature 316 340 - -
Vimu10g02604 543 ProSitePatterns Fumarate lyases signature. 360 369 IPR020557 GO:0003824
Vimu10g02604 543 Gene3D - 449 519 - -
Vimu10g02604 543 SUPERFAMILY L-aspartase-like 60 231 IPR008948 GO:0003824
Vimu10g02604 543 PANTHER ARGININOSUCCINATE LYASE 249 542 IPR009049 GO:0004056|GO:0042450
Vimu10g02604 543 CDD Argininosuccinate_lyase 79 540 IPR009049 GO:0004056|GO:0042450
Vimu10g02604 543 NCBIfam argininosuccinate lyase 261 538 IPR009049 GO:0004056|GO:0042450
Vimu10g02604 543 Hamap Argininosuccinate lyase [argH]. 59 538 IPR009049 GO:0004056|GO:0042450
Vimu10g02604 543 FunFam Argininosuccinate lyase 446 517 - -
Vimu10g02604 543 FunFam Argininosuccinate lyase chloroplastic 314 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02604 Vimu-Chr10 37445185 37448621 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02604 K01755 - gmx:100796544 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02604 10 37445185 37448621 Vimu10g02604 10 37445185 37448621 ECH