Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02595 ATGCCCACTAACGACGATTTTCAAGGCGTTTCAAATTGCTATGTGTTTAAAAGCCGATTGCAAGAGTATGCCCAGAAGGCGGGGCTGCCCACTCCTGTATATGAAACTATCAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGACAGTGAATGATGTTCGGTATGATTCTTTGCCTGGATTTTCCAATCGGAAGGCAGCAGAGCAGTCCGCTGCCGAAGTTGCTTTGGTGGAGTTGGCCAAATCTAATGTTGTTAATCATTCTATCACTCAACCTGTTCATGAAACAGGATTGTGCAAAAATTTACTTCAGGAATATGCCCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAAAAGGATGAAACACCTGGTCGAGCATCAGTATTTTCATGTACGGTGGACATTGGAGGTATACTCTATATTGGGGGAGCAGCAAAAACCAAGAAGGAAGCAGAGATTAAAGCTGCCAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCTCATGCTTCCCAAAACCAGGTCGGCCATCCACAGTTGACAGTCCTTCCATGCAGGAAAAGGGCAGCAGAATCTATTTCGATAGCCGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAGCACGGTTTAAAAGGAAATCTTCTAAGAGGAAAAATCCTAAAGATAAGTTAGGCCCAATTCATACTGAAAACGTGGGTATTGGAACAAATATTAATCATGAAGTAGAAACACAAGCAAGTGTTAATGGTGAATCGGGCGTGCAAGAAACGAAATCTGAAAAATTCACTTCAGAAGTCATGAAGAATTTAGAGGATGGAATATCATTTAATTATCCTGATAAAGAAGCATATGCTGTGGAGGGTTCTTTTGTTTTTGAAAATGGAAAGTCAGCAGATTTATATTCCAAGGAGAACAATCTTGGGACTGTTGTTACGGATCTCGCTTCCGTGTCTAATGGTGACATATTGGAAACAAGTGTGGAGATGAATAAACAGCTATACAACGGAGAAATGGTTTCAGACCATTGTGTTGTGGGGGGTTGA 1059 0.4155 MPTNDDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVTVNDVRYDSLPGFSNRKAAEQSAAEVALVELAKSNVVNHSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASHASQNQVGHPQLTVLPCRKRAAESISIADENSNPPKPKKARFKRKSSKRKNPKDKLGPIHTENVGIGTNINHEVETQASVNGESGVQETKSEKFTSEVMKNLEDGISFNYPDKEAYAVEGSFVFENGKSADLYSKENNLGTVVTDLASVSNGDILETSVEMNKQLYNGEMVSDHCVVGG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02595 352 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Vimu10g02595 352 SUPERFAMILY dsRNA-binding domain-like 15 82 - -
Vimu10g02595 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Vimu10g02595 352 Gene3D - 16 97 - -
Vimu10g02595 352 SUPERFAMILY dsRNA-binding domain-like 103 170 - -
Vimu10g02595 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Vimu10g02595 352 Gene3D - 98 170 - -
Vimu10g02595 352 MobiDBLite consensus disorder prediction 198 237 - -
Vimu10g02595 352 CDD DSRM_AtDRB-like_rpt2 100 169 IPR044451 GO:0003725
Vimu10g02595 352 FunFam double-stranded RNA-binding protein 1 13 89 - -
Vimu10g02595 352 PANTHER RIBONUCLEASE III 13 228 IPR011907 GO:0003723|GO:0004525|GO:0006364
Vimu10g02595 352 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Vimu10g02595 352 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Vimu10g02595 352 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Vimu10g02595 352 SMART DRBM_3 16 83 IPR014720 -
Vimu10g02595 352 SMART DRBM_3 102 169 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02595 Vimu-Chr10 37343200 37345302 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02595 - - gmx:100782651 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02595 10 37343200 37345302 Vimu10g02595 10 37343200 37345302 ECH