Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02585 ATGGCTTCTTCTACTGGAAGTAATTCCTCCTTATCTGCTACCCCTATCATTACATCTGCAAAACTGAATTGGAAAAATTATTTATCATGGTCGTCTGCTGTGGAGTTGTGGTTTCTTGGTCAAGGACACCATGATCACCTTGAACAAGATATTTCTATGGTCCCAGAAGAAGAAAAATCTCAGTGGCAGAAATTAGACTTTCAATTATGTGCTGTTTTGTGGCAATCAGTTGAGCAAGAGGTTTTAGATATCTTGAGACCCTATAAGACATGCTCCTCTTTTTGGAAAATGGCCCAAGATATTTTTGCTAATGATGTACAACGTCTTTTTGATGCAACCCAAAGAGCAACTTCTCTCAAACAAGTTAACCATGATATGGTTTCTCATGTTGCAAAAGCTCGGGCTGCGGTAGAAGAGTTAAAGAACTTCTTTGTAGCTGACTCATTAGAAAATCTCAACAAAAAGCTTGACAAGTTCTACATGGTCCTAATTTTGAAAAGTTTGCACTCTGATTTTGATCATGTACGTGATCAAGTTTTAGCTGGTGATCAAATCCCGTCGATGGATGGCTTAGTTACTCGACTCCTTCGGGTACCTACATTGGTAAAGGAAGAGAATTTAAGTGATGTTATTGAAACATTAGCCATGGTGACACCGCGAGGAAGAGGAGGAGGTAGGAGCAATCGAGGAGGACGTGGTGGTCGAAGTGGACGTCCTCAATGCTCATATTGTAAGAGAATGGGTCATACCCAAGACAAATGTTATTCCTTGTATGGCTTTCCAGACAAAGCTGCTCATTCTAAAATTTCTGATGAAGAGTACCAAGAGTTTTTGAGGTACAAGTCTGAAAAATCTTCTAATCTTGGCCAATTCTCCTCAATGGCAAATGTGTCAACTGCCTGCATCTCTCAATCTGTGGAAGGTCATAGTCCATGGATTCTTGACTCAGGTGCCTCAGATCATATCTCTGGTAACATCCCTTCATTTTCTTCCATGTCCTCTCCGAAAACTCCTCATTTTGTTACTGTTGCCAATGGATCCAAAGTTGCATCTCAAGGAATTGGCACAGTTTCCCTATCTCCTTCACTAAAATTGAATTCTGTTTTGTATATTCCTCATTGTCCTTGCAATTTAATCTCTTTGAGTCGATTGACTCGTTCCTTAAATTGTTTTGCAACCTTTTCTGCTAATTCCTTTGTTATACAGGAACATGGTACGGGTCGTCTGATTGGAGAAGGACATGAGTCACGAGGACTTTATTACTTGAAACCTAACTCCTCAGTTTCCTGTTTTGCAACTTCATCCCCAAAACTTTTGCATGATCGATTGGGCCACCCAAGCTTATCCAAGTTGAAGATGATGGTTCCAAGTCTCAAACATATTCAAGTCTTAGATTGTGAGTCTTGTCAGTTAGGAAAACATGTTAGATCTTCCTATCCTAAGAAGTTTGAGTCGCGTTGTAATTTTGCATTTTCAACTATTCACTCTGATATTTGGGGACCAAGTCGTGTTACTTCTTTTGGTTTTAATTATTTTGTAACTTTCATTGATGAATTTTCTCGATGTACTTGGGTTTATTTAATGAAAGAGAGATTTGAACTTTTTGCAATATTTGTGTCCTTTTTTAATGAAATTAAGAACCAATTTGGGAAGACAATTAAAATCCTCAAAAGTGATAATGCTAAGGAATACTTTTCTACAGCATTTTCTTCATTCTTATCTTCCCAAGGAATTTTACATCAGTCAACATGTCCCCACACTCCACAACAAAATGGCATTGCAGAGAGAAAGAATAGACATCTCATTGAAACTGCACGCTCCCTGATGTTGAATACTAATGTTCCTGTTCATCATTGGGGTGATGCAGTCCTTACTGCCTGTTTTTTGATCAATAGAATGCCTTCTTCCTCTCTTGAGAATAAAGTCCCTCACTCTGTCATTTTTCCAAATGATCCTCTTTTCCATGTCTCTTGTATATTTGGGTGTACTTGTTTTGTTCATAATGTGTCTCCAGGTCTTGATAAACTCTCTGCAAAAGCTATTAAGTGTGTCTTTCTGGGATACTCTCGCCTTCAGAAAGGATATATATGTTATTCTCCTTCAACCAAGAGGTATTACATGTCTGCTGATATCACATTCTTTGAAGATACACCTTTTTTCTTGTCCTCCATGGAGGACCGTTCATTTGTTCAACAAATGCTTCCTTTACCATCATGTGATCCCTTGGTTACTCCTGCTTCTTTACCTCAAACTCAAACTACAAATGATATTGTTCCTCCTCTTCTTCTCACATATCAGCGTCGAACACAATCTCAAACTCCAAACATTGAAGATCCTCAAGACTTAGATCCTCCTCCATCAGATTCCCAAACCATGGATCCTTCATCCTCTTCACCCTCTCTTGACTCAGATAATAATTGGCCTATTGCCCTCCGAAAAGGTATTCGCTCTACTCGTAATCCTTATCCTGTTTATAATTTTTTGAGTTATCACCGTTTGTCTCCTCCATATTTCTCCTTTGTTTCTTCTTTATCTTCCATTCAGGTTCCTAATAATGTTCATGAGGCATTTGGTCATCCTGGATGGCGACAAGCCATGATTGATGAAATGCAGGCACTTGAACACAATGGCACTTGGGACCTTGTTCCTCTTCCTCCTGGTAAGAAGCCTGTTGGTTGTAGATGGGTCTATGCTATTAAGGTGGGTCCTAATGGTGCAATCGATCGTCTCAAAGCTCGTTTGGTAGCTAAGGGATATACTCAAGTCTATGGCCTCGACTATTGTGATACCTTTTCTCCTGTGGTTAAAACCAGTATTGTTCGTATTTTGCTTGCTATGGCTGCCATTCGTCATTGGCCCCTTTACCAGTTGGACATTAAAAATGCTTTTCTTCATGGTGACCTAGAAGAAGAGATATACATGGAGCAACCTCCTGGGTTTGTTGCTCAGGGGGAGTCTGGGTTAGTCTGCAAATTACAACGTTCCCTCTATGGCTTGAAGCAATCACCTCGAGCTTGGTTTGGTAAATTTAGTCGGGTTGTGCAAAATTTTGGATTGAAACGATGTGAGGCGGATCATTCAGTATTTTATAGTCACTCTTCTCCTGATAAATGTGTTTATCTTATGGTCTATGTTGATGATATTGTCATTACAGGAAATGATGTCACTAGAATTGCTCAATTAAAGAATCATTTGTTCAACCACTTTCAAACCAAAGATTTGGGTCGGCTAAAATATTTCCTTGGTATTGAAGTGGCACAATCAAAGGAAGGTGTCATCATTTCACAAAGAAAATATGCTCTTGATATTTTGGAGGAAACAGGCATGACAAATTGCAAGCCCATTGATAGTCCTATGGACTCAAATCAAAAGTTAATGAAAGACAAAGGTGAACTTTTCTCAGACCCAGAGAGATATAGAAGGCTTGTTAGAAAACTCATCTATCTTACCATAACAAGACCTGATCTTTCTTATCCAGTGGGAGTTGTGAGTCAATTTATGCAAAATCCACATGTTGATCATTGGAATGCAGTGATTCGCATTCTTAGATATGTAAAAGGGAACCCAGGACAGAGATTGTTGTATGAGGACAAGGGAAGCACTCGAGTTGAGGGATATTGTGATGCAGATTGGGCTGGAAACCTTATATCTTGGAAAAGTAAGAAACAAAGTGTTGTTGCTCGATCTAGTGCTGAAGCTGAGTATCGATCTATGGCTCTAACTACATGTGAACTTGTGTGGATTAGACAACTCCTTCAAGAGTTGAAATTTTGTGAAAATGAGCAGATGAAGTTGTACTGTGACAATCAAGCCGCTCTTCACATTGCCTCCAATCCAGTGTCTCATGAAAGAACAAAACAGATAGAAATTGATTGTCATTTTATCAGAGAAAAGTTATTGTCAAAGGATCTTATTACTGACAAAGTCCTTGATGTTGTGATTGATGAGCTGTTCAAACTAAATCAGTGTACTATACAATGCAGGCCTCGAAAAAGTAGTTTATCCTTTCCTGCAGAAGATGATGAGGATGTTGAAGAGGAAGCAGATGAGGTGGTTCCTGATGGTGTTGAAGAGGTGGAACTTGCAAAAATAAACCTTGAAAAAACAGAGAGGGAACAAAGGTTGCTTCTTGATGATATTCGAAAATTGTCTCTTTGGTGTGATCCTTCTGTGGAACCACATCCAGAAAAGGAAAGCGACTTATGGATGATATCTGGTGGAAGATCTTTGCTGGTCCAGGGACTGAAGAGAGAACTTGTAATTGCTCAAAAATCTAGAAAAGCAGCATCCGCCTCATTAAGGATGGCTTTTCAAAAAGCTGCCCAACTACGACTAACAGAGAAGGAGAAGAATAAAAGTCCTTCCTATGCTATGCGCATATCTTTGCAAATTAATAAAGTTGTTTGGAGCATGCTTGTTGATGGTAAATCCTTTGCTGAGGCTGAGATTAATGACATGATATATGACTTTGACCGGGATTACAAGGATGTCGGCATTGCACGGTTTACAACAAAATATTTTGTTGTCAGAAATTGCCTGCCTAATGTCAAGTCTGATATGCTTTTGTCAGCATGGAATCCTCCATCTGAATGGGGAAATGATCTTACAAATTCTAATGCAATGTCCGGTTTTAATAGGTATGCTTCATTTTATTAG 4656 0.3915 MASSTGSNSSLSATPIITSAKLNWKNYLSWSSAVELWFLGQGHHDHLEQDISMVPEEEKSQWQKLDFQLCAVLWQSVEQEVLDILRPYKTCSSFWKMAQDIFANDVQRLFDATQRATSLKQVNHDMVSHVAKARAAVEELKNFFVADSLENLNKKLDKFYMVLILKSLHSDFDHVRDQVLAGDQIPSMDGLVTRLLRVPTLVKEENLSDVIETLAMVTPRGRGGGRSNRGGRGGRSGRPQCSYCKRMGHTQDKCYSLYGFPDKAAHSKISDEEYQEFLRYKSEKSSNLGQFSSMANVSTACISQSVEGHSPWILDSGASDHISGNIPSFSSMSSPKTPHFVTVANGSKVASQGIGTVSLSPSLKLNSVLYIPHCPCNLISLSRLTRSLNCFATFSANSFVIQEHGTGRLIGEGHESRGLYYLKPNSSVSCFATSSPKLLHDRLGHPSLSKLKMMVPSLKHIQVLDCESCQLGKHVRSSYPKKFESRCNFAFSTIHSDIWGPSRVTSFGFNYFVTFIDEFSRCTWVYLMKERFELFAIFVSFFNEIKNQFGKTIKILKSDNAKEYFSTAFSSFLSSQGILHQSTCPHTPQQNGIAERKNRHLIETARSLMLNTNVPVHHWGDAVLTACFLINRMPSSSLENKVPHSVIFPNDPLFHVSCIFGCTCFVHNVSPGLDKLSAKAIKCVFLGYSRLQKGYICYSPSTKRYYMSADITFFEDTPFFLSSMEDRSFVQQMLPLPSCDPLVTPASLPQTQTTNDIVPPLLLTYQRRTQSQTPNIEDPQDLDPPPSDSQTMDPSSSSPSLDSDNNWPIALRKGIRSTRNPYPVYNFLSYHRLSPPYFSFVSSLSSIQVPNNVHEAFGHPGWRQAMIDEMQALEHNGTWDLVPLPPGKKPVGCRWVYAIKVGPNGAIDRLKARLVAKGYTQVYGLDYCDTFSPVVKTSIVRILLAMAAIRHWPLYQLDIKNAFLHGDLEEEIYMEQPPGFVAQGESGLVCKLQRSLYGLKQSPRAWFGKFSRVVQNFGLKRCEADHSVFYSHSSPDKCVYLMVYVDDIVITGNDVTRIAQLKNHLFNHFQTKDLGRLKYFLGIEVAQSKEGVIISQRKYALDILEETGMTNCKPIDSPMDSNQKLMKDKGELFSDPERYRRLVRKLIYLTITRPDLSYPVGVVSQFMQNPHVDHWNAVIRILRYVKGNPGQRLLYEDKGSTRVEGYCDADWAGNLISWKSKKQSVVARSSAEAEYRSMALTTCELVWIRQLLQELKFCENEQMKLYCDNQAALHIASNPVSHERTKQIEIDCHFIREKLLSKDLITDKVLDVVIDELFKLNQCTIQCRPRKSSLSFPAEDDEDVEEEADEVVPDGVEEVELAKINLEKTEREQRLLLDDIRKLSLWCDPSVEPHPEKESDLWMISGGRSLLVQGLKRELVIAQKSRKAASASLRMAFQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEINDMIYDFDRDYKDVGIARFTTKYFVVRNCLPNVKSDMLLSAWNPPSEWGNDLTNSNAMSGFNRYASFY 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02585 1551 Pfam Golgi-body localisation protein domain 1343 1534 IPR019443 -
Vimu10g02585 1551 MobiDBLite consensus disorder prediction 218 239 - -
Vimu10g02585 1551 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 876 1119 IPR013103 -
Vimu10g02585 1551 ProSiteProfiles Integrase catalytic domain profile. 476 651 IPR001584 GO:0015074
Vimu10g02585 1551 Gene3D - 485 658 IPR036397 GO:0003676
Vimu10g02585 1551 PANTHER GAG-POL-RELATED RETROTRANSPOSON 532 1306 - -
Vimu10g02585 1551 MobiDBLite consensus disorder prediction 771 805 - -
Vimu10g02585 1551 Pfam GAG-pre-integrase domain 418 474 IPR025724 -
Vimu10g02585 1551 Pfam Integrase core domain 492 588 IPR001584 GO:0015074
Vimu10g02585 1551 CDD RNase_HI_RT_Ty1 1204 1309 - -
Vimu10g02585 1551 SUPERFAMILY Ribonuclease H-like 488 645 IPR012337 -
Vimu10g02585 1551 SUPERFAMILY DNA/RNA polymerases 875 1293 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02585 Vimu-Chr10 37226345 37233129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02585 824 1298 Receptor kinase-like Gene Family AT4G23160 46.680 1.43e-142 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02585 - K12169 qsa:O6P43_029879 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02585 10 37226345 37233129 Vimu10g02585 10 37226345 37233129 ECH
Vimu1g01695 1 17334941 17339886 Vimu10g02585 10 37226345 37233129 PCT