Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02578 ATGACTTTACCACTTCAAGTGAGAGAGACACCGCAATGGCTTGACCGCAAAGTGAGCGACACAACGAATCACAGAGCACCCTTAAGCGAGACAGATCACGCAATGACTTCACCGGAGAATGACCTACAAAACGAAAGAGAGACCACAATCTACCATGACAGAGACGGCAATGGCTTCACCGGAGAATTAGTGAGACAACAGAAGAGAGAGCACGATTTAGCAAAAGGCCGAGAAAGATTACACCCTAAACCCAAGAGACAAAAGATGAAACAGAGAACCACGGAACCAATTGAAAAGAAACTGCCAAATGAAAAATTTTGCTTTTTCCATTCCGGTTATGTCCTCGCATCAGGATTTTCCTTTGATTTCTTTTTTAATTCAAATAACGAATCAGCACCGTCCGTTCATCTGCCCGGTGATGGCGAACCACCCCCTCTCCGCCGGAATCAGACGCTTTCCTCATTACCATTTACCTTCTTAACAGGAAAATTTCACTGGAACAGTTTTGTGTTCGGGACACGAACTCTTTGTAGCACCGTTGCTTCACGCGCTTCGACTTTGCACGCGCCGTTCTTGCGCAAGCTCAAATCCCCAAAGCAGAATCCATTGCTGGTGCTTCAAAATTGGGTGGACGAAGGCAACGATGTTTCACCCTCCCAGTTCAGAAGCATCGCCAGAACCCTAGTTAAATCGAAGCGCTACCACCACGCCCTTGAGGTTCATATAATGCAGAGAAGCAAGTTTGAGCAGCAACAGATGGAAGACTTGCGACCGGTTGTAGAAATGGGTGGAACGGAGAAACTGATAAAGAGGAGCTGGGTTTTTGTGAAAATACTTTTGTCCTGGGAAGTTTTTGCTCACATAATTGGGGCTGGGGAGTGGGGAGGAGAGCAACTTCGAGGCATTGAAGCTCTAGCGCAGGGGATATTATTGAAGATGGAGCGGAAGAAAGTGGCGCAAAATGTAGAAGTCCACTGTACCATTAGTGGTTTTGGGCCAGCTACTTTGCCCCACTTTCAAGGATTTACTATGCAAGGCATTTCATACCCGACATTTTCCGATAAGGGATTCTTTCAGTCTTTATTTAAGTGGGTAGAAAATCAGAAGAATTTCCGTATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTGTGGTTTAACGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCGGCTGCAAAGAAGGCGGCTTATCTCACACTTCTCCGTGGATATGTAAGATATAGGGATACTACTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGAGTTGGGGCTAGTGGTGAGTCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACCTGTGACTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAAAATACCCTGCAATGTTCTCTCCTACAATCTTTGGATGAATGCCTGTAGTGAGGAAGAAGGATACAGGATTGCAGCAGTAGAGACAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCTACATTGGCCAATGTTTACAAGAAAGCAGGGCAACCTAAGAAAGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTGTCTACCTGTAAGCACCTCGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAAGATAAGGAGGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGATGAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACGTTCTGCAAGCCGAGAGAGTCTTCTCAGAATGGGAATCTAATTGTCAAAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGGATGGATTAATGGAAAAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGCTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTGAAGAGGAAGAAAACAGACGAGGCTTTTATTGCAATGAAAAGAGCTTTGGCTATGACAAAAAATTGTCACTGGAGGCCACCACATGGACTTGTGTTGGCCATTGCGGAGATTTTGGAGAAAGATGGGAATCTTGAATATGCAAACAATTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTACCATTGTATAAAATATTGCTAAGAATGCACCTTTATGCCAACAAACCACCTCTCCATATCCTTAAAATGATGGATGAAGATAAGATTGAGATGGATGATGAGACACATTCCATTGTAACATCTGCTCCATTACGTTTTCCTGATTGCCTGTTACAAGCTGAAAAGTTTGGAGGTGAAGCAGTAAACAGGAAGTTGATTTCGTTCTTGCCAAATGGAATGCATTCAAAGGTCAGGGGTAATAGAAAACTAGAAAGATTGGCAGAGCTTAGGCATGATTGCAGAACTCCATCTGACTTTTGGGCTCATTTTAGTGGAGCATTTGACAGCCAATGGCAATATCAGCGAAGCCTATTTTTGGACCTCAAAAGCAGTGTTTTCCCCCTAATTCACCTTCAAAGGGTCTTTAGATTCTCTCGTGCTTCTTGTGCTGCCTTCTGTTGTTCCTCCCCTCCTTTGGAAAAGGTGGCCATAACAGCTGTGATCATATGGAAGAAGAGGACTTTGCTTCCAGCTCTCGTTAATATACTTAATAGTCAGTCACTGGTGATTCTGCCGGGGGCTTACCATTAG 2757 0.4305 MTLPLQVRETPQWLDRKVSDTTNHRAPLSETDHAMTSPENDLQNERETTIYHDRDGNGFTGELVRQQKREHDLAKGRERLHPKPKRQKMKQRTTEPIEKKLPNEKFCFFHSGYVLASGFSFDFFFNSNNESAPSVHLPGDGEPPPLRRNQTLSSLPFTFLTGKFHWNSFVFGTRTLCSTVASRASTLHAPFLRKLKSPKQNPLLVLQNWVDEGNDVSPSQFRSIARTLVKSKRYHHALEVHIMQRSKFEQQQMEDLRPVVEMGGTEKLIKRSWVFVKILLSWEVFAHIIGAGEWGGEQLRGIEALAQGILLKMERKKVAQNVEVHCTISGFGPATLPHFQGFTMQGISYPTFSDKGFFQSLFKWVENQKNFRMIPVDHAMKLELIIENCGLTEAEEYFMNLPDSAAKKAAYLTLLRGYVRYRDTTKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCDYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYRIAAVETVFRQMQNDKNVEVGWSSLATLANVYKKAGQPKKAILVLKDAEKKLSTCKHLGYFFLITLYASLKDKEGVLRLWEASKAVDERISCANYICILTCLVKLGDVLQAERVFSEWESNCQKYDIRVSNVLLGAYVRDGLMEKAESLHLHTLQKGGCPNYKTMEILVEGYVKRKKTDEAFIAMKRALAMTKNCHWRPPHGLVLAIAEILEKDGNLEYANNYITDIHNFGLASLPLYKILLRMHLYANKPPLHILKMMDEDKIEMDDETHSIVTSAPLRFPDCLLQAEKFGGEAVNRKLISFLPNGMHSKVRGNRKLERLAELRHDCRTPSDFWAHFSGAFDSQWQYQRSLFLDLKSSVFPLIHLQRVFRFSRASCAAFCCSSPPLEKVAITAVIIWKKRTLLPALVNILNSQSLVILPGAYH 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02578 918 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g02578 918 MobiDBLite consensus disorder prediction 13 27 - -
Vimu10g02578 918 Pfam PPR repeat 625 644 IPR002885 -
Vimu10g02578 918 MobiDBLite consensus disorder prediction 67 93 - -
Vimu10g02578 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Vimu10g02578 918 Gene3D Tetratricopeptide repeat domain 518 714 IPR011990 GO:0005515
Vimu10g02578 918 Gene3D Tetratricopeptide repeat domain 357 497 IPR011990 GO:0005515
Vimu10g02578 918 MobiDBLite consensus disorder prediction 28 42 - -
Vimu10g02578 918 PANTHER OS12G0527900 PROTEIN 184 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02578 Vimu-Chr10 37132499 37140753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02578 361 711 EF-hand Containing Proteins AT1G02150 31.818 3.16e-63 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02578 - - gmx:100813805 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02578 10 37132499 37140753 Vimu10g02578 10 37132499 37140753 ECH