Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02572 ATGGAGAGCTTCAAGGGACACAACGAAACTGAGAAAAATCTTGCAGAAACTCTCCTACAACCGGAAGAGGCTGCTATTCATGCAGAACAACGACACGACCAACCGTACGACGAACAAAGTTTCGGAAACAAACTCTGGCTCGAAACGAAGAAGCTATGGGTAATTGTGGGGCCCTCCATCTTCAGCCGCCTGGCCTTGTACAACATGAACGTTGTCACTCAAGCCTTCGCCGGTCACTTGGGTGAGGTGGAACTCGCCGCCATTTCTATAGCGAACACCGTCATCGTCGGTTTCAATTTCGGCCTCCTGCTGGGGATGGCGAGCGCGTTGGAGACACTGTGTGGGCAAGCGTATGGCGCGAAGAGATACCACATGTTGGGAATATACATGCAGAGGTCATGGATTGTTCTCTTCCTGTGCTGTTTCGTGCTGTTGCCGTTTTACATATTCGCGACGCCGCTTCTGAAGTTTCTGGGGCAGCCGGATGAGGTGGCGGAGTGGAGCGGCGTGGTGGCGGTGTGGCTGATTCCTCTTCACTTCAGTTTTGCGTTTCAGTTTCCTCTGCAGAGGTTCCTCCAGTGCCAGCTGAAGACGGCGGTTATTGCGTGGGTATCCCTGGCGGGCCTGGTGGTGAATGCGGTAACTAGTTGGCTCTTGGTGTATGTGTGGGATTTTGGACTTTATGGTGCAGCTATTTCTTTGGACATATCATGGTGGGTTTTGGTTTTTGGCATGTATGCTTACACTGCCTATGGTGGATGCCCTTTAACTTGGAAAGGTTTCTCAGTTGAAGCCTTTTCTGGACTCTGGGAATTCCTCAAACTCTCTTCTGCTTCTGGGGTCATGTTATGCTTGGAGAATTGGTACTACAGAATACTCGTTCTTATGACTGGCCAGTTGGAGAATGCCACCATAGCCATTGATGCCTTGTCTATATGCATGACCATTAATGGGTGGGAGATGATGATTCCCCTGGCTTTTTTCGCCGGTACAGGAGTAAGGGTGGCAAACGAGCTAGGTGCAGGGAATGGAAAAGGAGCAAAATTTGCAACGCAAGTGTCAGTGACAGAATCAATAGTGATTGGGGTTGTGTTCTGCGTTCTAATAATGACATTTCATGACTATTTGGCTTACATATTCACCAGCAGCTCTTCGGTACTACAAGCAGTTGACGACATGTCATTCCTCTTAGCCATAACAATTCTTCTCAACAGCGTTCAGCCAGTTTTGTCAGCATATGTAGCATATATAAATATAGGAAGCTATTACCTCATCGGTCTCCCACTGGGAATTATCATGGGATGGGTCTTCAAAACTGGTGTTGCTGGTATATGGACTGGCATGATCTTCGGTGGCACAGCACTTCAAACATTGATACTCATCATAGTAACCCTACGATGTGATTGGGAAAAAGAGGCTGAGAAAGCTCGGTTTAGTGTGAATAAATCCTCTACTTCCTACACAATTTTCCGTGTTCCTTCGTCCGTCCTCGCCTACTCATTCCCTTTCCTACTTGTCACACGTTCCTCGTCTGCTCCGTTAGGCCGGGTACCTGTCAATGACACTTCGACGATCAATCCGGCCGGTCTCTCCCGACGGGGTTGGTTTCTCCATTCGGTATACCGATACTGCCGTGACCTTATGGCTATGCAGATCTTCGTGAAAACTCTTCATCGCCTGCTGGTACACCGTCCGTCGGTCTTGCGCCCTCCAAGCCTTAGGCAGTTTTACTATCGTAGGGCTTTGTCATGGCGACGTAAAGATTTACCTATAAAACAAGTCACGATCGCCCTCGGATGTCGCGTCCCTCAGGTTCTGTCTGGTCTCTATTGCTCGGCCTTAGGGGGATTGCCTCTGGTATCTGGTATGGTGAATTTGGAAGAAGATTCCGATGAGCATGCTGGCCACTCGGCCGGGTGGGAACGTGTTCCATTGGAGAATGCTCATGTTCCAAGGCGCGGACCGGCGCAACATGTTCCATTGGAGAATGCTCATGTTCCCAAAGTGCGGACCGATGTCGGGGCGACAGAGGCTGATTATACGAACCCATCCACCACTCGGAACCACCCGCTATGCCCTTCACCGCCCGGCCAAGTCAACAGGATGTTTCCGTTCATCAACTTGGATATATCTTCGTGCATTGACTTGGTTGCTGGAGGGGGTCGGCAGGCTATGCCCTTCACCGCCCGGCCAAGTCAACAGGATGTTTCCGTTCATCAACTTGGTTTTCGAGGCCAAGTTGACAGGATATCTCCCTTCATTGACTTGGCTGCTGGAGGGGGTCGGCAGGCTATGCCCTTCACCGCTCGGTCGAGTCGAGATTTCAGTTTACGGATTCGTTAG 2343 0.5023 MESFKGHNETEKNLAETLLQPEEAAIHAEQRHDQPYDEQSFGNKLWLETKKLWVIVGPSIFSRLALYNMNVVTQAFAGHLGEVELAAISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRYHMLGIYMQRSWIVLFLCCFVLLPFYIFATPLLKFLGQPDEVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLAGLVVNAVTSWLLVYVWDFGLYGAAISLDISWWVLVFGMYAYTAYGGCPLTWKGFSVEAFSGLWEFLKLSSASGVMLCLENWYYRILVLMTGQLENATIAIDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATQVSVTESIVIGVVFCVLIMTFHDYLAYIFTSSSSVLQAVDDMSFLLAITILLNSVQPVLSAYVAYINIGSYYLIGLPLGIIMGWVFKTGVAGIWTGMIFGGTALQTLILIIVTLRCDWEKEAEKARFSVNKSSTSYTIFRVPSSVLAYSFPFLLVTRSSSAPLGRVPVNDTSTINPAGLSRRGWFLHSVYRYCRDLMAMQIFVKTLHRLLVHRPSVLRPPSLRQFYYRRALSWRRKDLPIKQVTIALGCRVPQVLSGLYCSALGGLPLVSGMVNLEEDSDEHAGHSAGWERVPLENAHVPRRGPAQHVPLENAHVPKVRTDVGATEADYTNPSTTRNHPLCPSPPGQVNRMFPFINLDISSCIDLVAGGGRQAMPFTARPSQQDVSVHQLGFRGQVDRISPFIDLAAGGGRQAMPFTARSSRDFSLRIR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02572 780 PANTHER MULTIDRUG RESISTANCE PROTEIN 44 469 - -
Vimu10g02572 780 CDD MATE_eukaryotic 48 475 IPR045069 GO:0042910|GO:1990961
Vimu10g02572 780 Pfam MatE 58 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g02572 780 Pfam MatE 280 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g02572 780 NCBIfam MATE family efflux transporter 58 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02572 Vimu-Chr10 37077955 37085142 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02572 K03327 - gmx:100500204 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02572 10 37077955 37085142 Vimu10g02572 10 37077955 37085142 ECH