Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02558 ATGGCTGCTCTCCGCACTGTGCTTCGTCACATTAACACGTGCGCCACCTTCGCTCCACCGCCGCGCCTTCCTATGGCATTGCGTTTGAGTTGTGGCGTCACGTGGCACTATCTTATTCCCTCCAAACCCTCCAGAACCGTTAAATACCGTGCAGGTTCCGACAGTTACAAGTTAGTAGTGAAGAAAGACGAGCGGTTGACAGCGGGAGAGTGTGTCGACGAGGTTGTTGGAAGTGGGACCACAATTGCGGCCATAGTGACTTCCTTGGGGGGGCCACCTGCCGCCGTTGGAATCGTTCGGCTTTCGGGCCCTGAAGCAGTGTCTATTGCGGGTCGGGTGTTCCGGCCCGCCCGGAACTCGTGGTGGCCCACAAGCCACGTCGTCGAATACGGTGTCGTCTTGGACTCCGATGGCAACGTCATCGACGAGGTCCTGGTGGTGCCGATGCTGGCTCCGAGGTCGTACACGCGCGAAGATGTGGTGGAGCTTCAGTGTCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTAAGGACTTGTTTGGAAGCCGGAGCAACGCTTGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGGCGTTTGGACCTCTCACAAGCCGAAAATGTTGGAAGATTAATCACCGCCAAATCTGTGGCTGCTGCAGATGCTGCACTGCAAGGAATTCAGGGCGGCTTTTCTTCTCTTGTTCGATCTTTGCGGAGTCAGTGCATTGAGTTGCTTACTGAGATTGAAGCACGTTTGGACTTCGATGATGAGATGCCGCCTCTGGATTTGAATATGGTTATGGATAAAATCCATGACATGTCACGAGACGTTGAGAATGCATTGGAGACAGCAAACTATGACAAGCTTCTGCAGTCTGGATTACAGATAGCTATTGTTGGCCGTCCGAATGTTGGCAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGCATCAGTGTCAGTGGTATTCCTATCACCCTTCTTGATACAGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGGTCTGAAGCAGTTGCTAGGGGTGCTGATGTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTCGAAAGGATTCAATCTACCAAGGGATCAACTGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAAATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATTTCAGAGTCATAAAATGTTCAGCAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTACAAGACTTAGAGAGGGCGGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAAATAAGTGGAGAAAATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATAGGTAAATAG 1638 0.4933 MAALRTVLRHINTCATFAPPPRLPMALRLSCGVTWHYLIPSKPSRTVKYRAGSDSYKLVVKKDERLTAGECVDEVVGSGTTIAAIVTSLGGPPAAVGIVRLSGPEAVSIAGRVFRPARNSWWPTSHVVEYGVVLDSDGNVIDEVLVVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALQGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNMVMDKIHDMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADVIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGFQSHKMFSKHVFTCAVTGQGLQDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGENISEEVLSNIFGKFCIGK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02558 545 Gene3D tRNA modification GTPase MnmE domain 2 202 545 IPR027368 -
Vimu10g02558 545 CDD TrmE_N 81 200 IPR018948 -
Vimu10g02558 545 Pfam GTP-binding protein TrmE N-terminus 81 201 IPR018948 -
Vimu10g02558 545 Hamap tRNA modification GTPase MnmE [mnmE]. 80 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vimu10g02558 545 Pfam 50S ribosome-binding GTPase 298 419 IPR006073 GO:0005525
Vimu10g02558 545 Pfam MnmE helical domain 204 542 IPR025867 -
Vimu10g02558 545 Gene3D Probable tRNA modification gtpase trme; domain 1 70 201 IPR027266 GO:0005515
Vimu10g02558 545 Gene3D - 297 473 IPR027417 -
Vimu10g02558 545 FunFam tRNA modification GTPase MnmE 76 201 - -
Vimu10g02558 545 CDD trmE 294 466 IPR031168 -
Vimu10g02558 545 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 94 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vimu10g02558 545 NCBIfam small GTP-binding protein domain 297 439 IPR005225 GO:0005525
Vimu10g02558 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 461 IPR027417 -
Vimu10g02558 545 FunFam tRNA modification GTPase MnmE 297 473 - -
Vimu10g02558 545 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 296 466 IPR031168 -
Vimu10g02558 545 PANTHER TRNA MODIFICATION GTPASE GTPBP3 65 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02558 Vimu-Chr10 36903085 36906937 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02558 K03650 - gmx:100818096 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02558 10 36903085 36906937 Vimu10g02558 10 36903085 36906937 ECH