Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02557 ATGGCTGACATTGGGCGTCGGAATGGATATGCAAATAGTGTACAGCCAAATAGGCACCCTGCTGCAATATCCGAAGTAGATGAATTCTGCAATGCCCTTGGCGGAAACAGGCCAATTCATAGCATTTTAATTGCAAACAATGGAATGGCAGCAGTCAAATTTATACGTAGTGTTAGGAGCTGGGCCAATGAGACGTTTGGAACAGAAAAAGCCATCTTGTTGGTTGCCATGGCTACTCCAGAGGACATGAGAATCAATGCCGAACATATCAGAATAGCTGACCAATTTGTGGAAGTACCTGGTGGGACCAATAACAATAACTATGCCAATGTGCAGCTTATTCTTGAGATGGCTGAGATAACTCATGTTGATGCCGTGTGGCCTGGTTGGGGTCATGCTTCAGAAAATCCTGAGCTTCCAGATGCATTAAAAGCAAAAGGAATTGTATTTCTCGGACCTCCTGCCATATCTATGGCTGCATTGGGAGATAAGATTGGTTCATCCTTGATTGCTCAAGCAGCAGAAGTGCCAACCCTTCGATGGAGTGGTTCTCATGTGAAAATTCCTCCTGAAAGTTCCTTGGTTACTATTCCTGATGAAATTTATCGGGAAGCGTGTGTGTATACAACAGAGGAAGCAGTAGCTAGTTGTCAAGTTGTAGGATACCCTGCAATGATCAAAGCATCTTGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAGGTAAGGGCGTTGTTCAAGCAAGTCCAAGGTGAAGTTCCGGGTTCACCTATATTTATAATGAAGGTTGCATCCCAGAGTCGACATTTAGAAGTCCAGTTACTTTGTGATCAGTATGGAAATGTTGCAGCTTTGCATAGTCGTGATTGCAGTGTTCAAAGGAGGCACCAAAAGATTATTGAGGAGGGTCCCATTACCGTAGCACCCATAGAAACAGTGAAAAAACTGGAGCAAGCAGCTAGAAGGTTGGCTAAATCAGTAAATTATGTTGGGGCGGCTACTGTTGAGTATCTTTACAGTATGGAAACAGGAGAGTACTACTTTTTAGAGTTGAACCCTCGGCTACAGGTTGAACATCCTGTTACTGAGTGGATAGCAGAGATAAATCTGCCTGCAGCTCAAGTTGCCGTTGGAATGGGTGTCCCCCTCTGGCAAATTCCTGAGATAAGGCGTTTCTATGGGGTGGAGCATGGTGGGGGATATGATGCTTGGAGAAAAACTTCAGTTTTAGCTACCCCTTTTGATTTTGACAAAGCACAATCCACAAAGCCAAAAGGTCATTGTGTGGCTGTGCGAGTGACTAGTGAGGACCCCGATGATGGCTTTAAGCCTACGAGTGGCAAAGTGCAGGAGCTTAGCTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTCAAGTCTGGAGGAGGAATTCATGAATTCTCAGATTCACAGTTTGGGCATGTGTTTGCTTTTGGAGAATCTAGGGCTTTAGCAATTGCAAATATGGTTCTAGGGCTGAAGGAGATTCAAATTCGGGGAGAAATCCGTACCAATGTTGATTACACCATTGATCTTCTGAATGCTTCTGACTACAGAGACAACAAAATTCACACAGGTTGGCTAGACAGTAGAATTGCAATGCGTGTTAGAGCAGAGAGGCCTCCCTGGTATCTTTCTGTTGTTGCAGGGGCACTCTATAAAGCTTCTGCTAGCAGTGCAGCTTTGGTTTCAGACTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGCACATATCTCTTGTCCATTCTCAAGTGGCCTTGAACATTGAGGGAAGCAAATATACAATTGACATGATACGAGGTGGATCTGGAAGTTATAGATTGAGAATGAATGAATCAGAGATAGAAGCAGAAATACACACTTTACGTGATGGAGGTTTGCTAATGCAGGCAAGTATTTGTTCTCTAAACACCTATTTTATGCGTGTTATTTATTTTGCACTTTTCCCCATGACACTGGATGGAAACAGTCATGTAATATATGCAGAGGAAGAAGCAGCTGGAACTCGCCTTCTAATAGATGGAAGAACTTGCTTGCTTCAGAATGATCATGATCCATCAAAGTTGGTGGCGGAGACACCATGCAAGCTTTTGAGATATTTGGTCGTGGATGACAGTCATGTTGATGCTGACACACCATATGCTGAAGTTGAGGTCATGAAAATGTGCATGCCTCTTCTTTCACCTGCTTCTGGAATTATTCATTTCAAAATGTCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGTCTTGACCTAGATGATCCTTCAGCTGTAAGAAAGGCAGAGCCCTTCACAGGGAGCTTCCCACTCCTGGGACCTCCTACTGCAATTTCTGGTAAAGTTCATCAGAAATGTGCAGCAAGCTTAAATGCTGCAAGGATGATTCTTGCTGGGTATGAGCACAATATTGATGAAGTTGTGCAAAGTTTGCTTAATTGTCTTGATAGTCCTGAGTTGCCTTTCCTTCAATGGCAAGAGTGCTTGGCTGTTCTGGCAACCCGTCTTCCCAAAGATCTAAAAAATGAGCTGGAATCAAAATATAAGGAGTTTGAGAGGATTTCAAGCTCCCAAATTGTTGATTTCCCTGCCAAATTATTGAAGGGAATTCTTGAAGCTCATCTTTCTTCCTGTCCCGACAAAGAAAAAGGAGCCCAAGAAAGACTAGTTGAACCTCTTCTGAGTCTTGTTAAGTCTTATGAGGGTGGACGAGAGAGCCATGCCCATATAATTGTTCAATCCCTTTTTGAAGAGTATCTTTCTGTTGAGGAATTATTTAGCGATAATATTCAGGCTGATGTAATTGAACGTCTGCGTCTTCAATACAAGAAGGATTTATTGAAGATTGTTGATATTGTGCTCTCTCATCAGGGCATCAAGAGTAAAAATAAGCTGATATTGCGTCTGATGGATAAATTGGTTTACCCTAATCCTGCTGCTTACAGGGATCAGTTAATCCGTTTTTCTTTACTCAACCATACAAGTTATTCTGAGTTGGCACTAAAGGCAAGTCAACTGCTGGAACAAACTAAATTAAGTGAACTTCGATCCAACATTGCTAGAAGTCTCTCTGAACTAGAGATGTTCACAGAGGATGGTGAAAATATTGATACTCCCAAGAGGAAGAGTGCCATCAACGACCGAATGGAGGACCTTGTGAGTGCTCCTTTGGCTGTTGAAGATGCCCTTGTGGGTTTATTTGATCACAGTGATCACACCCTTCAGAGGAGGGTCGTTGAAACTTATATTCGAAGACTCTACCAGCCTTATCTTGTCAAAGGGAGTGTCAGGATACAATGGCACAGATCTGGTCTTATTGCCACGTGGGAGTTCTATGATGAGTACATTGAAAGGAAGAATGGGGTTGAAGACCAAACTTCAAAGAAATCAGTGGAGGAGAAAGACAGTGAGAAAAAGTGGGGAGTGATGGTTGTAATTAAATCTCTTCAATTTTTGTCTGCAATTATCACTGCTGCATTGAGGGAGGCGACCAATAACCTTCATGAAACACTGACCAGTGGTTCTGCGGAACCAGTTAACCATGGTAATATGATGCATATTGGATTAGTGGGCATCAACAACCAGATGAGTTTATTGCAAGACAGCGGTGATGAGGATCAAGCTCAAGAAAGAATCAATAAATTAGCTAAAATACTCAAAGAGCAGGAAGTAGGCTCCACCATTAGAGCTGCAGGTGTCGGTGTAATCAGTTGTATCATCCAAAGGGATGAAGGACGTGCCCCAATGAGGCACTCTTTTCACTGGTCAGAAGATAAGCTGTACTATGCAGAGGAACCTCTGTTGCGTCATCTGGAACCTCCTCTATCCATTTATCTTGAATTGGACAAACTTAAGGGCTATGAGAATATACGGTATACTCCATCTCGTGATCGTCAATGGCACCTCTACACGGTTATGGATAACAAGCCACAACCAATTCAAAGAATGTTTCTTCGCACACTTCTAAGACAGCCAACCACAAATGAAGGATTTTCTTCATATCAAAGGCTGGATGCAGAAACATCTCGAATCCAATTGGCTATGTCCTTTACTTCAAGAAGCATTTTTAGGTCCTTGATGGCTGCAATGGAGGAGTTGGAACTTAATGCACACAACGCCAATATAAAACCTGAGCATGCTCATATGTACCTCTATATCATACGGGAGCAACAAATAGACGATCTTGTTCCCTATCCCAAGAGAATTAATGTAGATGCTGGGAAAGAAGAAACAACAGTTGAGGCAATCTTGGAAGAACTGGCACAGGAGATCCATTCATCCGTTGGTGTAAGAATGCATAGATTAGGGGTTGTTGTGTGGGAAGTCAAGCTCTGGATGGCAGCCGTTGGACAGGCAAATGGTGCTTGGAGGGTCATTGTGAACAATGTGACTGGTCATACATACACTGTACATATATACCGAGAAAAGGAGGATACCAGCACTCATAAAGTGGTATACAGTTCAGTCTCGGTTAAGGGTCCACTGCATGGTGTGCCAGTGAACGAAAATTATCAACCTCTGGGAGTTATTGACCGAAAACGTCTTTCAGCAAGAAAGAACAGCACCACATATTGCTATGATTTTCCACTTGCATTTGAAACAGCTTTGGAACAGTCATGGGCAATCCAACAGCCGGGATTTCAAAGAGCCAAAGATAAAAGTCTTCTAAAGGTAACAGAGCTTAAATTTGCAGAGAGAGAAGGTAGCTGGGGTACTCCTCTTGTTCCTGTGGAGCGTTACCCTGGACTCAATGATGTTGGTATGGTAGCCTGGTTTATGGATATGCGTACCCCTGAGTTCCCATCTGGAAGAACAATATTGGTTGTTTCAAATGATGTGACCTTCAAGGCTGGTTCTTTTGGACCGAGAGAGGATGCTTTCTTCCGTGCAGTAACTGATCTTGCATGTAAAAGAAAACTACCTTTAATTTATTTAGCAGCAAATTCTGGTGCCCGTTTAGGTGTAGCAGAGGAAGTCAAATCCTGTTTCAGAGTTGGTTGGTCTGAGGAATCTAGTCCTGAGCATGGCTTTCAGTATGTATATTTAACACCTGAGGACTATGCTCGGATTGGATCTTCAGTCATAGCACATGAATTAAAGCTTGAAAGTGGAGAAACCAGATGGGTTATAGATACCATTGTTGGCAAGGAGGATGGCCTAGGGGTTGAAAACTTGAGTGGCAGTGGGGCTATTGCTGGTGCCTATTCCAGGGCATACAAGGAAACTTTTACATTGACATATGTGACTGGCAGAACTGTTGGAATAGGTGCTTATCTTGCTAGGCTTGGAATGAGATGCATACAGAGGCTTGATCAGCCCATAATTCTTACTGGTTTTTCAGCACTAAACAAACTTCTTGGTCGGGAAGTATACAGTTCTCACATGCAACTTGGTGGACCCAAAATCATGGCTACAAATGGAGTTGTTCATCTTACAGTTTCCGATGACCTTGAAGGTGTTTATTCTATTTTGAAGTGGCTTAGCTACATTCCTTCTCATATAGGTGGTGCGCTTCCCATTGTTAAGCCTCTTGATCCTCCAGAAAGGCCAGTGGAGTATTTACCAGAAAACTCGTGTGATCCTCGGGCTGCCATTTCTGGAGCCCTGGATGGTAATGGAAGATGGCTGGGAGGCATCTTTGACAAGGACAGCTTTGTGGAGACACTGGAGGGATGGGCTAGAACAGTTGTTACAGGAAGGGCAAAGCTTGGAGGAATCCCTGTGGGAATTGTTGCTGTAGAAACACAGACAGTGATGCAAATAATACCTGCTGATCCTGGTCAGCTTGATTCTCATGAGAGGGTTGTTCCTCAAGCTGGGCAAGTCTGGTTTCCTGATTCTGCAACCAAAACAGCCCAAGCAATATTGGATTTCAATAGAGAAGAGCTCCCGCTTTTCATTCTCGCAAACTGGAGAGGCTTTTCAGGAGGGCAAAGGGACCTTTTTGAAGGAATTCTTCAGGCTGGTTCAACTATTGTAGAGAACCTTAGAACATACAAGCAACCCATATTTGTGTACATCCCAATGATGGGGGAACTCCGAGGTGGTGCATGGGTGGTTGTTGACAGTCAAATCAATTCAGACCACATTGAAATGTATGCTGATCGAACAGCTAAAGGTAATGTCCTTGAGCCGGAAGGAATGATTGAGATCAAATTCAGAACAAGGGAATTGTTAGAGTGTATGGGTAGACTGGATCAACAGTTGATAACTCTGAAGGCAAAACTTCAGGAAGCCAAGAGTAACAGGGACCTTGCCGCCTTTGAATCCCTACAGCAGCAGATTAAATCCCGTGAAAAACAGCTTTTGCCTGTGTATACCCAGATAGCCACAAAGTTTGCTGAACTGCATGATACTTCCTTAAGAATGGCTGCCAAGGGTGTAATTAGAGAAGTTCTGGACTGGCGTAACTCCCGAGCTGTCTTCTACCAGAGACTTCACCGAAGAATTGGAGAGCAGTCACTGATCAACAGTGTGAGAGATGCTGCTGGTGACCATTTGTCACATGCATCTGCAATGAACTTGCTCAAAGAATGGTATTTGAATTCTGATATTGCCAATAGTAAAGAAGATGCGTGGTTGGATGATGAAGCCTTCTTCAAATGGAAGAATAATCCTGAGAATTACGAGAATAAACTAAAGGAACTGCGTGTGCAGAAAGTGTTGCTTCAATTGACAAACATTGGTGACTCAGCCCTAGATTTGCAAGCTCTACCTCAAGGTCTTGCAGCCCTTTTAAGCAAGTTGGAGCCATCGGGTCGTGGGAAGTTGACTGATGAACTTCGAAAGGTACTTGATTAG 6849 0.4332 MADIGRRNGYANSVQPNRHPAAISEVDEFCNALGGNRPIHSILIANNGMAAVKFIRSVRSWANETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLILEMAEITHVDAVWPGWGHASENPELPDALKAKGIVFLGPPAISMAALGDKIGSSLIAQAAEVPTLRWSGSHVKIPPESSLVTIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPIETVKKLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGVPLWQIPEIRRFYGVEHGGGYDAWRKTSVLATPFDFDKAQSTKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVAGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVALNIEGSKYTIDMIRGGSGSYRLRMNESEIEAEIHTLRDGGLLMQASICSLNTYFMRVIYFALFPMTLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVVDDSHVDADTPYAEVEVMKMCMPLLSPASGIIHFKMSEGQAMQAGELIASLDLDDPSAVRKAEPFTGSFPLLGPPTAISGKVHQKCAASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECLAVLATRLPKDLKNELESKYKEFERISSSQIVDFPAKLLKGILEAHLSSCPDKEKGAQERLVEPLLSLVKSYEGGRESHAHIIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLILRLMDKLVYPNPAAYRDQLIRFSLLNHTSYSELALKASQLLEQTKLSELRSNIARSLSELEMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQPYLVKGSVRIQWHRSGLIATWEFYDEYIERKNGVEDQTSKKSVEEKDSEKKWGVMVVIKSLQFLSAIITAALREATNNLHETLTSGSAEPVNHGNMMHIGLVGINNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSTIRAAGVGVISCIIQRDEGRAPMRHSFHWSEDKLYYAEEPLLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVMDNKPQPIQRMFLRTLLRQPTTNEGFSSYQRLDAETSRIQLAMSFTSRSIFRSLMAAMEELELNAHNANIKPEHAHMYLYIIREQQIDDLVPYPKRINVDAGKEETTVEAILEELAQEIHSSVGVRMHRLGVVVWEVKLWMAAVGQANGAWRVIVNNVTGHTYTVHIYREKEDTSTHKVVYSSVSVKGPLHGVPVNENYQPLGVIDRKRLSARKNSTTYCYDFPLAFETALEQSWAIQQPGFQRAKDKSLLKVTELKFAEREGSWGTPLVPVERYPGLNDVGMVAWFMDMRTPEFPSGRTILVVSNDVTFKAGSFGPREDAFFRAVTDLACKRKLPLIYLAANSGARLGVAEEVKSCFRVGWSEESSPEHGFQYVYLTPEDYARIGSSVIAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVYSILKWLSYIPSHIGGALPIVKPLDPPERPVEYLPENSCDPRAAISGALDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLECMGRLDQQLITLKAKLQEAKSNRDLAAFESLQQQIKSREKQLLPVYTQIATKFAELHDTSLRMAAKGVIREVLDWRNSRAVFYQRLHRRIGEQSLINSVRDAAGDHLSHASAMNLLKEWYLNSDIANSKEDAWLDDEAFFKWKNNPENYENKLKELRVQKVLLQLTNIGDSALDLQALPQGLAALLSKLEPSGRGKLTDELRKVLD 2282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02557 2282 Gene3D - 206 268 IPR013815 GO:0005524
Vimu10g02557 2282 Pfam Acetyl-CoA carboxylase, central region 768 1512 IPR013537 GO:0003989|GO:0005524|GO:0006633
Vimu10g02557 2282 FunFam Acetyl-CoA carboxylase 1 698 769 - -
Vimu10g02557 2282 FunFam acetyl-CoA carboxylase isoform X1 184 267 - -
Vimu10g02557 2282 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Vimu10g02557 2282 ProSitePatterns Biotin-requiring enzymes attachment site. 725 742 IPR001882 -
Vimu10g02557 2282 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Vimu10g02557 2282 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1519 1858 IPR011762 -
Vimu10g02557 2282 SUPERFAMILY Single hybrid motif 700 770 IPR011053 -
Vimu10g02557 2282 Pfam Carboxyl transferase domain 1614 2166 IPR034733 -
Vimu10g02557 2282 SUPERFAMILY PreATP-grasp domain 18 161 IPR016185 -
Vimu10g02557 2282 Coils Coil 2078 2098 - -
Vimu10g02557 2282 SUPERFAMILY ClpP/crotonase 1522 1848 IPR029045 -
Vimu10g02557 2282 SUPERFAMILY ClpP/crotonase 1853 2243 IPR029045 -
Vimu10g02557 2282 FunFam acetyl-CoA carboxylase isoform X2 8 163 - -
Vimu10g02557 2282 CDD biotinyl_domain 703 767 - -
Vimu10g02557 2282 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Vimu10g02557 2282 ProSiteProfiles ATP-grasp fold profile. 191 383 IPR011761 GO:0005524|GO:0046872
Vimu10g02557 2282 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1862 2177 IPR011763 GO:0016874
Vimu10g02557 2282 Gene3D - 1852 2251 - -
Vimu10g02557 2282 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Vimu10g02557 2282 Coils Coil 1372 1392 - -
Vimu10g02557 2282 SMART Biotin_carb_C_2 434 541 IPR005482 -
Vimu10g02557 2282 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Vimu10g02557 2282 Gene3D - 269 527 - -
Vimu10g02557 2282 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 400 - -
Vimu10g02557 2282 Gene3D - 698 769 - -
Vimu10g02557 2282 Pfam Biotin-requiring enzyme 702 767 IPR000089 -
Vimu10g02557 2282 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Vimu10g02557 2282 Gene3D Biotin dependent carboxylase carboxyltransferase 1670 1734 - -
Vimu10g02557 2282 FunFam acetyl-CoA carboxylase isoform X2 1852 2251 - -
Vimu10g02557 2282 ProSiteProfiles Biotinyl/lipoyl domain profile. 694 768 IPR000089 -
Vimu10g02557 2282 Gene3D - 1520 1847 - -
Vimu10g02557 2282 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 9 2280 - -
Vimu10g02557 2282 Gene3D - 164 204 - -
Vimu10g02557 2282 FunFam acetyl-CoA carboxylase 1-like 269 527 - -
Vimu10g02557 2282 Gene3D - 8 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02557 Vimu-Chr10 36887623 36901527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02557 5 2281 Acyl Lipid Metabolism Gene Families AT1G36160 80.658 0.0 3842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02557 K11262 - gmx:100778658 4293.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02557 10 36887623 36901527 Vimu10g02557 10 36887623 36901527 ECH