Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02552 ATGGCTGCTGAAGTATATTACCAGGCTATTGGCATCGTGCAGTCCCATTCTCATCTGAATAATTTTAATCGTCACCAGAAGCACCAAAGCAACATAGTGAGATTGGTAGCTAGGGATTTTATCAGTGGTAATGGCTTGTCAAGGAGAAGTACTAACCGCTCTGGCCTGAGGAATTGTACAGTAATTCGATCTCTAGCTTCGCAAACATCAGTGGTTGATCCGGTGTTGTCTCCTTCAAGAAGCAACGCTGGTGACAGTAACAAGAAATCAAGTAAGATGAACACTCCTGTTAATTACATTTATTACTGGACGGCTTTCTTTCCGTTGCTTCTTGAAGTTGAACTCACCAAATCTGAGGTGTCATTATGGAATGAAAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAAGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTTACATCGGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCTATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATTTTGCACAATGAAAGTGAACGAGCAAGGTCGTGGAGTCAAGTTTTTAGTGAAGATACAAAAAAACAGTCCATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGGGAACTGCAAGGTCTCAATAAGCAAGAAACAGCCGACAGATATGGAAAAGAGCAAGTCCACGAGTGGCGCCGGAGTTATGACATACCTCCTCCAAATGGTGAAAGCTTGGAAATGTGTGCCCAAAGAGCAGTTGCCTATTTCAGAGACCAACTTGATTTATGCTGTTTGGCCAAATTTTTGGCATGGTTGAAGACAGCATGTAACATTTACAAGGAACTGATTCCATTGACATCAATTCTGCAGATCGAACCACAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGGATTCCCATGCTTTACATTATCAAAGAGGGAAGATTCATAAGGAGGGGAAGTCCCATAAGGCCTTCTGAAGCTGGAGTTTATGCCTATACAAAGCGTTTGGCTCTTTACAAGCAGAAGTTGGATGACATGTTCCAATGA 1185 0.4177 MAAEVYYQAIGIVQSHSHLNNFNRHQKHQSNIVRLVARDFISGNGLSRRSTNRSGLRNCTVIRSLASQTSVVDPVLSPSRSNAGDSNKKSSKMNTPVNYIYYWTAFFPLLLEVELTKSEVSLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIILHNESERARSWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAQRAVAYFRDQLDLCCLAKFLAWLKTACNIYKELIPLTSILQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFIRRGSPIRPSEAGVYAYTKRLALYKQKLDDMFQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02552 394 Gene3D - 120 364 IPR029033 -
Vimu10g02552 394 NCBIfam 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 194 357 IPR005952 GO:0006096|GO:0016868
Vimu10g02552 394 PANTHER PHOSPHOGLYCERATE MUTASE 120 380 IPR005952 GO:0006096|GO:0016868
Vimu10g02552 394 Coils Coil 382 394 - -
Vimu10g02552 394 SMART PGAM_5 121 329 IPR013078 -
Vimu10g02552 394 Pfam Histidine phosphatase superfamily (branch 1) 122 188 IPR013078 -
Vimu10g02552 394 Pfam Histidine phosphatase superfamily (branch 1) 191 274 IPR013078 -
Vimu10g02552 394 CDD HP_PGM_like 121 363 IPR013078 -
Vimu10g02552 394 SUPERFAMILY Phosphoglycerate mutase-like 121 360 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02552 Vimu-Chr10 36833533 36836298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02552 K01834 - gmx:100802621 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02552 10 36833533 36836298 Vimu10g02552 10 36833533 36836298 ECH